MXO52568.5prime Sequence
858 bp (740 high quality bases) assembled on 2007-04-11
> MXO52568.5prime
CAGTCGACATGGAGCAGACACCGATCACCGATGCGGAGAAGGTGCGCATC
GTATCGGACTTCATCCTACATGCGCCGCCCGGCGAGTTCAACGAAGTGTT
CAACGATGTGCGGGAGCTCCTCAAGAATGACACTCTGCTAAAGGATGGGG
CTAGCCACGCCTTCGCCCAATACAACAAGGACCAGCTGACTCCGGTTCGC
ATCGAGGGCACCGATCATAACGCCATCATATCGGAACACAACGATCTGGG
AAACGGTCGCTTCTACGACCCGCGCACAAAGCAAGCCTTCAAATACGACC
ACCTCCGAAAAGAGGCTTCCGACTACCAGGACGTAGAGGCAGATGCCACT
GCGGAGCCCTGGAGGGCGGCCCTCGACCTGGAGACGCTCGCCTACACTGC
CAGTCATTATAGACACGGGGTCAGCTCTGTTTTTGGAAAGGCGCAGGGCA
ACCAGATCACCCTGACCATTTGCATCGAAGACCACCAGTTCCAGCCGAAG
AACTATTGGAATGGCCGATGGCGCTCCCAGTGGCATGTGACCTTCCAGGC
GGGCAGCGGAACCGCCGAACTGAAGGGTGTGCTCAAGGTGCAGGTGCATT
ACTACGAGGACGGCAACGTCCAGCTGGTGTCCTCAAAGGAGTGCCGCGAA
AGCGTGGTGGTCAGCAACGAGCAGCAGGTGGCCAAGGAGGTGATCCGTCT
GATCGAGGACGCCGAGAATGAGTACCAGCTGGCCATTTCGGAGAACTATC
AGACGATGTCGGACACGACATTCAAGGCAATGCGTCGCCAGTTGCCCATC
ACCAGGACCAAGATCGACTGGAGCAAAATCGTCTCGTACAGCATTGGCAA
GGAACTGA
MXO52568.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10540-PA | 861 | CG10540-RA | 1..850 | 9..858 | 4250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cpa-RA | 1918 | CG10540-RA | 236..1085 | 9..858 | 4250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21058611..21059050 | 419..858 | 2200 | 100 | Plus |
| 2R | 25286936 | 2R | 21058022..21058263 | 9..250 | 1210 | 100 | Plus |
| 2R | 25286936 | 2R | 21058383..21058555 | 249..421 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:47:37 has no hits.
MXO52568.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:13 Download gff for
MXO52568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10540-PA | 1..849 | 9..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:51 Download gff for
MXO52568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpa-RA | 226..1084 | 1..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:25 Download gff for
MXO52568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpa-RA | 226..1084 | 1..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:25 Download gff for
MXO52568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21058612..21059049 | 420..857 | 100 | | Plus |
| 2R | 21058012..21058262 | 1..249 | 98 | -> | Plus |
| 2R | 21058384..21058553 | 250..419 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:51 Download gff for
MXO52568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16945889..16946058 | 250..419 | 100 | -> | Plus |
| arm_2R | 16945517..16945767 | 1..249 | 98 | -> | Plus |
| arm_2R | 16946117..16946554 | 420..857 | 100 | | Plus |
