MXO52569.5prime Sequence
705 bp (635 high quality bases) assembled on 2007-04-11
> MXO52569.5prime
CAATCGACATGAGTTTCTTCGGGAAGATGTTCGGCGGCAAGAAGGAAGTG
GCCCCCACCACCGGCGAGGCGATACAGAAGCTGCGCGAGACGGAGAACAT
GCTTATCAAAAAGCAGGAGTTCCTGGAGGCCAAGATCGAGGACGAACTGA
ATATAGCCCGCAAGAATGCGTCTAAAAACAAAAGAGTGGCCCTGCAAGCA
CTCAAGAAAAAGAAGCGGCTGGAGAAGCAACTCCAGCAGATCGATGGCAC
CCTGTCCACAATCGAAATGCAGCGCGAGGCTCTGGAGAGCGCCAACACAA
ACACTGCCGTCTTGACCACGATGAAGAATGCCGCGGATGCCCTCAAGAGA
GCCCATCAGAATATGGACGTGGACAAGGTGCACGACATGATGGATGACAT
TGCCGAGCAGCAGGACGTGGCCCGCGAGATTTCCGATGCCATTTCGAACC
CAGTGGCATTCGGCGCCGATCTGGATGATGAGGATCTCGAGCGGGAACTC
AACAAGCTGGAGCAGGAGAACTTTGATAAGGAAATCATTGGCATACCCGA
GCCGACGCCCACATTGCCAGAAGCACCCACAGAAGATTTGCCCGAGAAGG
CCAAAGAAAAGAAAAAGGCGACAACCACGACTGCCGTGGAGGATGATGAT
GATCCAGACATGAAGCAGCTTTTATCCTGGTCCAACGCAAGCTTTCTAGA
CCATT
MXO52569.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8055-PA | 681 | CG8055-RA | 1..678 | 9..686 | 3340 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shrb-RA | 1267 | CG8055-RA | 118..795 | 9..686 | 3360 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9142713..9143000 | 652..365 | 1395 | 99 | Minus |
| 2R | 25286936 | 2R | 9143058..9143238 | 365..185 | 905 | 100 | Minus |
| 2R | 25286936 | 2R | 9143620..9143797 | 186..9 | 890 | 100 | Minus |
| 2R | 25286936 | 2R | 9142618..9142656 | 686..648 | 195 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:26:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| baggins | 5453 | baggins BAGGINS 5453bp | 1580..1648 | 456..521 | 122 | 66.7 | Plus |
MXO52569.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:14 Download gff for
MXO52569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8055-PA | 1..681 | 9..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:49 Download gff for
MXO52569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shrb-RA | 118..798 | 9..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:41 Download gff for
MXO52569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shrb-RA | 118..798 | 9..690 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:41 Download gff for
MXO52569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9142614..9142655 | 649..690 | 95 | <- | Minus |
| 2R | 9142717..9143000 | 365..648 | 99 | <- | Minus |
| 2R | 9143059..9143236 | 187..364 | 100 | <- | Minus |
| 2R | 9143620..9143797 | 9..186 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:49 Download gff for
MXO52569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5030119..5030160 | 649..690 | 95 | <- | Minus |
| arm_2R | 5030222..5030505 | 365..648 | 99 | <- | Minus |
| arm_2R | 5030564..5030741 | 187..364 | 100 | <- | Minus |
| arm_2R | 5031125..5031302 | 9..186 | 100 | | Minus |
