MXO52572.5prime Sequence
922 bp (807 high quality bases) assembled on 2007-04-11
> MXO52572.5prime
CAGTCGACATGACTGACCAACCAACTCCACAGTGGGTGACCAAGGAGCTA
TTCAGCAGCTTGTTGGAACAGAGTAATCGAAATTTCAAGGCGATCATTAA
ATTTGTTCCAACATCAGCGATTAGCAAAGGGGAAAACTATTTGACGATCG
TGCTGCGCATACAAATTGAAATGCAGCTGAAAGATAACAGCATAGAAGAT
GTCAGCTACATACTGAAGATTCCTTTAGTCCCGGAAGATGAGAAGAACGA
CTTCCACGAAATGTTCGATGCCGAACTGGACATGTACGATCATCTGATAC
CAGAATTGGAGGATCTATATGCCAAAAACACTTCCATATCACCAAAATTC
AAGCCTGTTCATCTGAAGTTTCCAGGAGAGCTGGTAAAAAGCGACTACAT
TCTTTTGGAGGATCTGCGGAAGAAGGGATATAGGAATGCCGACAGAACCC
AGGGATTGGAGCAGTTTGAAGTGGAGGCGGTCCTCAAGAAGTTGGCACAG
TGGCACGCAGCCTCTGCAAAAAGAGTAGTCGAGCTGGGTGAATACGAGAA
GGACATCCGGGAGAGTTACTTTACTACTGAGCACCAGAAATTACTCGATG
AATTCAACATTAATTTTTGTATGCCCTTCCTGGAGTGCATGCAGCAATAT
AATCTTGAGCCAGGACAGCTCGTTCTCATAAGCGACTATACATCTCAACT
GACGGATCTGAATATTGAGTTTGGTAAGAACGATCCTCTGGAGTTATCTG
TGTTAAACCACGGAGATTTTTGGTGCAATAACTTTATGTTCAAGTATAAA
AACGCCTCAGAAGTGGAGGACGTTTGCTTTGTTGACTTCCAGCTCCCAAA
ATATGGCACACCCGCCCAAGATCTTCTATGCATACTGATGACCTCACCTA
AGTTTTCAATCCAACTGGACAA
MXO52572.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10675-PA | 1230 | CG10675-RA | 1..914 | 9..922 | 4520 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:55:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CHKov2-RA | 1450 | CG10675-RA | 58..971 | 9..922 | 4540 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:55:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25330423..25330921 | 680..182 | 2480 | 99.8 | Minus |
| 3R | 32079331 | 3R | 25330197..25330372 | 856..681 | 880 | 100 | Minus |
| 3R | 32079331 | 3R | 25330968..25331146 | 187..9 | 880 | 99.4 | Minus |
| 3R | 32079331 | 3R | 25330075..25330142 | 922..855 | 325 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:55:31 has no hits.
MXO52572.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:15 Download gff for
MXO52572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10675-PA | 1..912 | 9..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:52 Download gff for
MXO52572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHKov2-RA | 50..969 | 1..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:15 Download gff for
MXO52572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHKov2-RA | 50..969 | 1..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:15 Download gff for
MXO52572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25330972..25331153 | 1..183 | 97 | | Minus |
| 3R | 25330077..25330141 | 856..920 | 98 | <- | Minus |
| 3R | 25330198..25330372 | 681..855 | 100 | <- | Minus |
| 3R | 25330423..25330919 | 184..680 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:52 Download gff for
MXO52572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21155799..21155863 | 856..920 | 98 | <- | Minus |
| arm_3R | 21155920..21156094 | 681..855 | 100 | <- | Minus |
| arm_3R | 21156145..21156641 | 184..680 | 99 | <- | Minus |
| arm_3R | 21156694..21156875 | 1..183 | 97 | | Minus |
