MXO52574.5prime Sequence
817 bp (814 high quality bases) assembled on 2007-04-11
> MXO52574.5prime
CAGTCGACATGGCGATGAACAGTGGGACGCAAACGAATGCGCTGACATCA
TCCTTTACCATGAAGAAAAAGGATGCGGCCGCGGAAAAGGAGAACCTATG
GTCGGCGATATTGAATGAAGTACAAACACAGGGCAGCACAAAACTTCCAT
CAAACAAATCTGTACTAGTATTAGGCGACAATGCCACCGGAAAGACGACA
CTCATTGCCAAACTGCAGGGCGTCGAGGATCCGAAGAAGGGTTCCGGCCT
GGAGTATGCCTACATTGATGTCAAGGATGAGTACAGAGACGACATGACGC
GTTTAGGCGTTTGGGTCCTGGACGGTGATCCAGGACACACAAACCTGCTA
CACTATGCGCTCAACGAAACGAACTATGCACACACACTCGTCATCCTCAC
CGTTTCGATGACGCAGCCGTGGGGCTGGCTGGAGCAGCTAAACCATTGGA
TCAAGGTCCTCGGCCAGCACATCGATAGCCTGCAGCTGGACGCCAAAGAG
AAGGAGGCGGCCCGCCAGCGACTGACCACCACGTGGCAGAGCTACTGTGA
GGTGGGCGACGATCTGGATCCAGGCTCCCCCGTCAAGCGGACGATGCGCA
ACAACTCGATCGACGAGGATGACCTGCTGCCGCTGACGGAGGATGCACTA
ATTACAAATCTGGGCCTCGACATCGTTGTTGTGGTCACAAAGACGGACTA
CATGACCACGCTAGAGAAGGAGTACGAGTATCGTGACGAGCACTTTGACT
TCATCCAGCAGTGGATACGTAACTTCTGCCTGCGGCATGGCACTTCGCTC
TTCTACACGAGCGTCAA
MXO52574.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1938-PD | 1482 | Dlic2-RD | 1..809 | 9..817 | 4045 | 100 | Plus |
| CG1938-PA | 1482 | Dlic2-RA | 1..809 | 9..817 | 4045 | 100 | Plus |
| CG1938-PC | 1482 | Dlic2-RC | 1..809 | 9..817 | 4045 | 100 | Plus |
| CG1938-PB | 1197 | Dlic2-RB | 1..524 | 294..817 | 2620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dlic-RA | 2241 | CG1938-RA | 347..1157 | 7..817 | 4055 | 100 | Plus |
| Dlic-RD | 3715 | CG1938-RD | 347..1157 | 7..817 | 4055 | 100 | Plus |
| Dlic-RB | 3371 | CG1938-RB | 97..813 | 101..817 | 3585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11161317..11161718 | 291..692 | 2010 | 100 | Plus |
| X | 23542271 | X | 11161060..11161251 | 100..291 | 960 | 100 | Plus |
| X | 23542271 | X | 11161781..11161907 | 691..817 | 635 | 100 | Plus |
| X | 23542271 | X | 11155135..11155230 | 7..102 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:37:53 has no hits.
MXO52574.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:16 Download gff for
MXO52574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1938-PC | 1..807 | 9..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:36 Download gff for
MXO52574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dlic-RD | 342..1155 | 1..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:18 Download gff for
MXO52574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dlic-RD | 342..1155 | 1..815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:18 Download gff for
MXO52574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11161061..11161251 | 101..291 | 100 | -> | Plus |
| X | 11155130..11155228 | 1..100 | 97 | -> | Plus |
| X | 11161318..11161718 | 292..692 | 100 | -> | Plus |
| X | 11161783..11161905 | 693..815 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:36 Download gff for
MXO52574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11049163..11049261 | 1..100 | 97 | -> | Plus |
| arm_X | 11055094..11055284 | 101..291 | 100 | -> | Plus |
| arm_X | 11055351..11055751 | 292..692 | 100 | -> | Plus |
| arm_X | 11055816..11055938 | 693..815 | 100 | | Plus |
