MXO52576.5prime Sequence
847 bp (773 high quality bases) assembled on 2007-04-11
> MXO52576.5prime
CAGTCGACATGGTGGTCAATTTCAAGGTGTTCAAGAAGTGTTCCCCGAAC
AACATGATCACGCTCTACATGAACAGGCGTGATTTTGTAGATTCCGTGAC
TCAGGTGGAACCCATTGATGGAATCATTGTGCTGGACGATGAGTACGTGC
GCCAGAACCGCAAGATCTTCGTGCAGTTGGTCTGCAATTTCCGATATGGG
CGCGAGGACGACGAGATGATCGGTCTGCGGTTCCAGAAGGAACTGACCCT
GGTCTCGCAGCAGGTGTGCCCACCCCAGAAGCAGGACATCCAGTTGACCA
AGATGCAGGAGCGTCTGCTGAAGAAGCTTGGCTCCAATGCCTATCCCTTC
GTGATGCAGATGCCACCAAGCTCGCCGGCCTCGGTGGTTCTCCAGCAGAA
GGCCAGTGACGAGAGCCAGCCCTGCGGAGTCCAGTACTTCGTAAAGATCT
TTACCGGAGACAGCGACTGCGATCGATCGCATCGCAGGAGCACCATTAAC
CTGGGCATCCGCAAGGTGCAGTACGCACCGACCAAGCAGGGCATCCAGCC
CTGCACCGTCGTTCGCAAGGACTTCCTTCTGTCGCCCGGAGAGCTCGAAC
TGGAGGTCACCCTCGACAAGCAGCTGTACCATCACGGCGAGAAGATCTCG
GTGAACATCTGCGTGCGCAACAACTCCAACAAGGTGGTGAAGAAGATCAA
GGCCATGGTGCAGCAGGGCGTCGATGTGGTCCTGTTCCAGAACGGTCAGT
TCCGCAACACGATCGCCTTCATGGAGACGAGCGAGGGATGTCCCCTGAAC
CCGGGATCCAGCCTGCAGAAGGTCATGTATCTGGTGCCCACCCTGGT
MXO52576.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5711-PA | 1095 | Arr1-RA | 1..839 | 9..847 | 4195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arr1-RB | 2327 | CG5711-RB | 120..958 | 9..847 | 4195 | 100 | Plus |
| Arr1-RA | 1435 | CG5711-RA | 120..958 | 9..847 | 4195 | 100 | Plus |
| Arr1-RC | 1356 | CG5711-RC | 150..879 | 118..847 | 3650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18078915..18079645 | 117..847 | 3655 | 100 | Plus |
| 2L | 23513712 | 2L | 18078388..18078496 | 9..117 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:03 has no hits.
MXO52576.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:17 Download gff for
MXO52576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5711-PA | 1..839 | 9..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:14 Download gff for
MXO52576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arr1-RA | 110..958 | 1..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:28 Download gff for
MXO52576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arr1-RA | 110..958 | 1..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:28 Download gff for
MXO52576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18078378..18078496 | 1..117 | 96 | -> | Plus |
| 2L | 18078916..18079645 | 118..847 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:14 Download gff for
MXO52576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18078378..18078496 | 1..117 | 96 | -> | Plus |
| arm_2L | 18078916..18079645 | 118..847 | 100 | | Plus |
