MXO52577.5prime Sequence
830 bp (733 high quality bases) assembled on 2007-04-11
> MXO52577.5prime
CAGTCGACATGGCAAAGTCGACACTTTATGCTGCTGGGGTGACCTGTCTG
GGCTTTATTTGCTTCGCCTTGGCATCTGTGGCCATTGGCATACCCATTTG
GGGTTACTACGATAGTCCATCGGGCGGCTATGACTTCGATCGAGGTTATT
TCGGACCGTTTAAGGTCTGCAAGCAATTGACTTATAATCGCGAGAAATGC
GGCAACGACGTGTCCAAGTTTAGATTAAGTAATGCGGTTTTTGTCAGTGG
ACTCTTGGCCATTGGCAGCTCAGCTGTGCTGGGCATCTTCTGCATTCTGT
CGGTCATTCAACACGCGATGATCTCATCCAGGGAGAAGGTGGTTATGCCC
TACACAACTCTAGTGATAGTGAAGTTAATGTTGGCATTGCTGGGAGGTGT
ACTGGCCATCATAGCGACGGTTTTGTTTGCTCTGCAAATTGATGAGCAGG
AGCGCTATGGCTTCAAGATATCGCGGGGCATTTCCTTCTATATACAGATT
GTGGCTATTGTTTTGACAATTGCTCTGTTCGTGGCCGCCCTGTACGATGT
GATCTACTCGCGCAGTCCAGGCGGAGATCCCACAATGGCGCTGGATGTGT
CATCTCCGGGCAGTGCCACTACGTTCAATAATCCTGGTTTCAAGGAGCCT
CGCAGTCGCAACGGCGTTTCGGTGACGGACGCATCCGGTAAGCCCTACAG
CGGAATCCGGAATGGAGCGGGAACGGCGGGCAGCGTGACCTCCATGAGCA
CCACCGTGACCAGCGTGTCCAATGGATCCACCCTTGACTCGGTGACTCGT
TCACCGCTGCGATCGAGTCTGAAGAAGCCG
MXO52577.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13698-PB | 951 | CG13698-RB | 1..822 | 9..830 | 4085 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13698-RC | 1617 | CG13698-RC | 616..1439 | 7..830 | 4105 | 99.9 | Plus |
| CG13698-RB | 2418 | CG13698-RB | 702..1525 | 7..830 | 4105 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18089310..18089646 | 830..494 | 1670 | 99.7 | Minus |
| 3L | 28110227 | 3L | 18090009..18090176 | 399..232 | 840 | 100 | Minus |
| 3L | 28110227 | 3L | 18090447..18090564 | 124..7 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 18090279..18090387 | 231..123 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 18089846..18089948 | 497..395 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:47:25 has no hits.
MXO52577.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:17 Download gff for
MXO52577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13698-PB | 1..822 | 9..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:13 Download gff for
MXO52577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13698-RB | 695..1525 | 1..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:54 Download gff for
MXO52577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13698-RB | 695..1525 | 1..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:54 Download gff for
MXO52577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18090448..18090571 | 1..123 | 97 | | Minus |
| 3L | 18090012..18090176 | 232..396 | 100 | <- | Minus |
| 3L | 18090279..18090386 | 124..231 | 100 | <- | Minus |
| 3L | 18089310..18089642 | 498..830 | 99 | <- | Minus |
| 3L | 18089846..18089946 | 397..497 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:13 Download gff for
MXO52577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18082410..18082742 | 498..830 | 99 | <- | Minus |
| arm_3L | 18082946..18083046 | 397..497 | 100 | <- | Minus |
| arm_3L | 18083112..18083276 | 232..396 | 100 | <- | Minus |
| arm_3L | 18083379..18083486 | 124..231 | 100 | <- | Minus |
| arm_3L | 18083548..18083671 | 1..123 | 97 | | Minus |
