MXO52578.5prime Sequence
872 bp (837 high quality bases) assembled on 2007-04-11
> MXO52578.5prime
CAGTCGACATGTTGGGAACTTTGCTGTGGATTTTCTTCGTCGGCCTGCTG
CTGTGTGCGTTCCTCTTTTCGAAGACCACCAAGGAGTTCCCGAAGTCCTG
GTTCGAGTGGAAGACTGAGTTTCGGTATCAGTACCTGGGAATCGTTGGGC
TCGTCCACGATGCCCAGTATAAGGCACGGGATCGAGTGGCACTTTATAAA
CAACCGGACCGCATTGCTGTCATCACCGGAGGCAATCGCGGCATCGGACT
GCGGATCGTGGAGAAGCTGCTGGCCTGCGACATGACTGTCGTCATGGGCG
TTCGTGATCCCAAAATTGCCGAAACCGCAGTTGCATCGATAGTCGACTTG
AATGCTACCAAGGGCAAGCTCATCTGCGAGCAACTGGATGTTGGGGATCT
GAAATCCGTAAAGGCATTTGCTCAGCTCATCAAGGAGCGGTATTCAAAAG
TGGATTTGTTGCTGAACAATGCTGGCATCATGTTTGCGCCCTTCAAACTA
ACCGCCGATGGCTACGAGTCGCACTTTGCCATCAACTTCCTGGGACACTT
TCTGCTCACCCACCTGCTTCTGCCTCAATTGAGGGCGGCAGGCAAGGAGG
GAAGGAACTCCAGGATCGTGAACGTCAGCTCCTGCGTGAATCTCATTGGA
CGCATCAACTATAAGGACATTAACGGAACAAAACACTATTACCCGGGAAC
CGCCTACAGTCAGTCAAAGCTTGCTCAGATCTTGTTCACCCGCCATCTGC
AGACACTGCTGGATGCAGAAAAGTCGCACGTGCAGGTCAATGTGGTGCAT
CCGGGCATTGTGGACACGGATCTGTTCGAGCACTCGGCCACCACATCGGT
GCCCATTTTCAAGAAGCTATTC
MXO52578.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11200-PB | 1068 | CG11200-RB | 1..864 | 9..872 | 4320 | 100 | Plus |
| CG11200-PA | 1068 | CG11200-RA | 1..864 | 9..872 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11200-RC | 1335 | CG11200-RC | 153..1016 | 9..872 | 4320 | 100 | Plus |
| CG11200-RA | 1447 | CG11200-RA | 265..1128 | 9..872 | 4320 | 100 | Plus |
| CG11200-RB | 1688 | CG11200-RB | 506..1369 | 9..872 | 4320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20305086..20305468 | 679..297 | 1915 | 100 | Minus |
| 2R | 25286936 | 2R | 20304836..20305028 | 872..680 | 965 | 100 | Minus |
| 2R | 25286936 | 2R | 20306415..20306595 | 189..9 | 905 | 100 | Minus |
| 2R | 25286936 | 2R | 20306243..20306352 | 298..189 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:30:52 has no hits.
MXO52578.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:18 Download gff for
MXO52578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11200-PA | 1..864 | 9..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:38 Download gff for
MXO52578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11200-RB | 500..1369 | 1..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:19 Download gff for
MXO52578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11200-RB | 500..1369 | 1..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:19 Download gff for
MXO52578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20304836..20305028 | 680..872 | 100 | <- | Minus |
| 2R | 20305086..20305467 | 298..679 | 100 | <- | Minus |
| 2R | 20306244..20306351 | 190..297 | 100 | <- | Minus |
| 2R | 20306415..20306601 | 1..189 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:38 Download gff for
MXO52578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16192341..16192533 | 680..872 | 100 | <- | Minus |
| arm_2R | 16192591..16192972 | 298..679 | 100 | <- | Minus |
| arm_2R | 16193749..16193856 | 190..297 | 100 | <- | Minus |
| arm_2R | 16193920..16194106 | 1..189 | 97 | | Minus |
