MXO52579.5prime Sequence
880 bp (678 high quality bases) assembled on 2007-04-11
> MXO52579.5prime
CAGTCGACATGGAGAGTGCCCTGCCGGTGGCCGAGTTTCAGCAGATAAAG
CTGCGTCCGGTGCCAAAGGTCAAACGCCGAGCCCCTCAGCCGCCAGTGAG
CCTTCGCCTGAAGCATAAAAATACTTCTGCCACCACAAAGACAACCACGC
TCACCACCCCCGCCAAACTGTATGGCAAGGATCTGAGTGAGTACGATGAT
GTGGATGTGGAGAGCCTGCTGGCCCAGCTCTCCCCCGAGGAGATAACCAT
ACTGGCCAAAGAAGTGGATCCCGATGACAACTTCCTGCCGCCAGACCAGC
GCAATAGCTATGAGTGCACCAAGGAAGCCACCGGGCCTCTCAATCGCAAG
CAGCTGATCGAGCACATCAATAAGCAGGCCATCGAGACCCCGGATCAGCC
GGAGTTCGAGCCGTTCGTTCAGGGCAAGGTTCGTGGAAAGAAGTGGGTCC
CACCGCCAAGGGATGCCCGCGACATCGAGGCCGAAGAACAAATCGCCATT
GACATGGGCGAGGAGTACGAACACGCCCTTAACGATGCCACGCAGGAGGA
GATCATCGATCTGGCCGCCATCCTCGGCTTCCACTCGATGATGAATCAGG
ACCAGTACCACGCCTCCTTGCTCAACAAGGGTCAGCCCGTGGGCCTGGGA
TGGGATGGCATTACGAAATCCACTCAGCAGAAGCTCTTCCCTATGGATCC
GCCCAACAACACAGATGTGGAGGAATCCATCAAGCGGGTCAAGGACGATG
ACTCCAAGCTGATTGACCTCAACTTGAACAACATTAAGAACATCTCGGAC
GAGAAACTCGAGCAACTGTTTGCCGCACTGCCTCAGAACGAACATTTGGA
AGTCCTCTCGCTAACAAATGTGGGCCTCAC
MXO52579.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1539-PB | 1212 | tmod-RB | 1..872 | 9..880 | 4360 | 100 | Plus |
| CG1539-PC | 1230 | tmod-RC | 133..890 | 123..880 | 3790 | 100 | Plus |
| CG1539-PD | 1320 | tmod-RD | 223..980 | 123..880 | 3790 | 100 | Plus |
| CG1539-PF | 1320 | tmod-RF | 223..980 | 123..880 | 3790 | 100 | Plus |
| CG1539-PA | 1104 | tmod-RA | 7..764 | 123..880 | 3790 | 100 | Plus |
| CG1539-PE | 1320 | tmod-RE | 223..980 | 123..880 | 3790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:55:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tmod-RB | 2508 | CG1539-RB | 160..1031 | 9..880 | 4360 | 100 | Plus |
| tmod-RJ | 2753 | CG1539-RJ | 519..1276 | 123..880 | 3790 | 100 | Plus |
| tmod-RI | 3000 | CG1539-RI | 766..1523 | 123..880 | 3790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:55:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30572023..30572535 | 276..788 | 2565 | 100 | Plus |
| 3R | 32079331 | 3R | 30571809..30571962 | 123..276 | 770 | 100 | Plus |
| 3R | 32079331 | 3R | 30571316..30571429 | 9..122 | 570 | 100 | Plus |
| 3R | 32079331 | 3R | 30572597..30572690 | 787..880 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:55:41 has no hits.
MXO52579.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:18 Download gff for
MXO52579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1539-PB | 1..872 | 9..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:59 Download gff for
MXO52579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RB | 151..1031 | 1..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:19 Download gff for
MXO52579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RB | 151..1031 | 1..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:19 Download gff for
MXO52579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30571307..30571429 | 1..122 | 96 | -> | Plus |
| 3R | 30571809..30571961 | 123..275 | 100 | -> | Plus |
| 3R | 30572023..30572535 | 276..788 | 100 | -> | Plus |
| 3R | 30572599..30572690 | 789..880 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:59 Download gff for
MXO52579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26398321..26398412 | 789..880 | 100 | | Plus |
| arm_3R | 26397029..26397151 | 1..122 | 96 | -> | Plus |
| arm_3R | 26397531..26397683 | 123..275 | 100 | -> | Plus |
| arm_3R | 26397745..26398257 | 276..788 | 100 | -> | Plus |
