MXO52580.5prime Sequence
681 bp (681 high quality bases) assembled on 2007-04-11
> MXO52580.5prime
CAGTCGACATGGCAACCACTCCACGCAGCGGCGGTGCCAGCGGCACTGGA
ACGGCGCAGCGGCCCAATGGCACCTCGCAGAACAAAAGCTGCCAATTCAA
GTTGGTGCTCCTCGGCGAGTCCGCTGTGGGCAAGTCCTCACTGGTGCTGC
GCTTCGTCAAGGGACAGTTCCACGAGTACCAGGAGAGCACGATAGGTGCG
GCCTTTCTGACACAGACTATTTGCATAGAGGACACTGTCGTTAAGTTCGA
GATCTGGGACACGGCTGGCCAGGAGCGGTACCACAGCTTAGCTCCCATGT
ATTATCGAGGAGCGCAGGCCGCTATTGTCGTCTATGATATACAGAATCAG
GACAGTTTTCAGCGTGCGAAGACCTGGGTCAAGGAACTGCATAAACAAGC
CTCACCAAACATTGTCATTGCGCTGGCCGGCAACAAGGCAGATTTGTCAA
ACATTCGCGTCGTAGAGTTCGATGAAGCGAAGCAATATGCCGAGGAGAAC
GGGCTGCTGTTCATGGAAACCTCCGCCAAGACGGGCATGAATGTGAACGA
CATCTTCTTGGCCATTGCCAAGAAACTACCTAAGAACGATGGCGCCAACA
ATCAGGGAACCAGCATAAGGCCGACTGGAACCGAAACAAATCGACCGACG
AACAACTGCTGCAAGGCAAGCTTTCTAGACC
MXO52580.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3664-PA | 660 | Rab5-RA | 1..657 | 9..665 | 3285 | 100 | Plus |
| CG3664-PB | 660 | Rab5-RB | 1..657 | 9..665 | 3285 | 100 | Plus |
| CG3664-PF | 660 | Rab5-RF | 1..657 | 9..665 | 3285 | 100 | Plus |
| CG3664-PD | 660 | Rab5-RD | 1..657 | 9..665 | 3285 | 100 | Plus |
| CG3664-PC | 660 | Rab5-RC | 1..657 | 9..665 | 3285 | 100 | Plus |
| CG3664-PE | 660 | Rab5-RE | 1..657 | 9..665 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab5-RI | 1775 | CG3664-RI | 274..931 | 8..665 | 3290 | 100 | Plus |
| Rab5-RH | 1772 | CG3664-RH | 275..932 | 8..665 | 3290 | 100 | Plus |
| Rab5-RG | 1785 | CG3664-RG | 284..941 | 8..665 | 3290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2361157..2361429 | 280..8 | 1365 | 100 | Minus |
| 2L | 23513712 | 2L | 2360633..2360801 | 567..399 | 845 | 100 | Minus |
| 2L | 23513712 | 2L | 2360971..2361093 | 399..277 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 2360472..2360570 | 665..567 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:00:31 has no hits.
MXO52580.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:18 Download gff for
MXO52580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3664-PE | 1..660 | 9..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:04 Download gff for
MXO52580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab5-RG | 275..941 | 1..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:49 Download gff for
MXO52580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab5-RG | 275..941 | 1..665 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:49 Download gff for
MXO52580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2361160..2361434 | 1..277 | 98 | | Minus |
| 2L | 2360472..2360569 | 568..665 | 100 | <- | Minus |
| 2L | 2360633..2360801 | 399..567 | 100 | <- | Minus |
| 2L | 2360972..2361092 | 278..398 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:04 Download gff for
MXO52580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2360472..2360569 | 568..665 | 100 | <- | Minus |
| arm_2L | 2360633..2360801 | 399..567 | 100 | <- | Minus |
| arm_2L | 2360972..2361092 | 278..398 | 100 | <- | Minus |
| arm_2L | 2361160..2361434 | 1..277 | 98 | | Minus |
