MXO52585.5prime Sequence
829 bp (828 high quality bases) assembled on 2007-04-11
> MXO52585.5prime
CAGTCGACATGATCCTGCTGGAAATCAATAATCGGATTATCGAGGAGACG
CTGCTGGTCAAATACCGTAATGCCCAGGCTGGACTGAAGCCTGAATCGAT
AGACATACGAATAGCAGACTTCGACGGCGTCCTTTATCACATTTCCAATG
TGAATGGCGATAAAACAAAAGTTCGGATCAGCATATCGCTGAAGTTCTAC
AAACAGCTGCAAGAACATGGAGCCGACGAGTTGCTGAAGCGTGAATATGG
CAGTCTGCTTACAGACACGGAAGAAGGCTACAATGTTTCCGTACTTATCA
ACCTGGAGGAGATTCCCGAGGACTGCGAGCAAATCGCAAAGAGAATCGGA
CTGCTGAAGCGCAACTGTTTCGCATCGGTTTTTGAAAAGTATTTTGACTA
TCAGGAGCAGGGCGAAGAGGGCCAAAAGCGTGCCGTCATTAACTACCGCA
ACGATGAGACTTTATATGTGGAAGCCAAGCCTGATCGTGTCACCGTCGTC
TTTAGTACCATTTTCCGGGACGAAGACGATGTCATTATCGGCAAAGTATT
TATGCAGGAATTGAGGGAAGGTCGGCGTGCCTCGCACACCGCACCACAAG
TGCTCTTTTCGCACCGAGAACCACCATTGGAATTGGCCAACACGGACGCT
AGGGTGGGCGACAACATTGGCTATGTCACATTCGTACTCTTCCCTCGGCA
TACCAACAAAGAAACAAGGGACAATACCATTAACTTAATTCACATGTTCC
GAGATTACTTGCACTACCACATTAAGTGTTCAAAGGCTTACATTCATTCG
CGCATGCGAGCAAAAACCTCGGATTTCCT
MXO52585.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10954-PA | 906 | Arc-p34-RA | 1..821 | 9..829 | 4105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arpc2-RB | 1974 | CG10954-RB | 537..1358 | 8..829 | 4110 | 100 | Plus |
| Arpc2-RA | 1941 | CG10954-RA | 504..1325 | 8..829 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20420897..20421117 | 464..684 | 1105 | 100 | Plus |
| 2L | 23513712 | 2L | 20420646..20420834 | 275..463 | 945 | 100 | Plus |
| 2L | 23513712 | 2L | 20420489..20420590 | 176..277 | 510 | 100 | Plus |
| 2L | 23513712 | 2L | 20420318..20420412 | 82..176 | 475 | 100 | Plus |
| 2L | 23513712 | 2L | 20422144..20422236 | 684..776 | 465 | 100 | Plus |
| 2L | 23513712 | 2L | 20417593..20417667 | 8..82 | 375 | 100 | Plus |
| 2L | 23513712 | 2L | 20422300..20422354 | 775..829 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:00:45 has no hits.
MXO52585.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:19 Download gff for
MXO52585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10954-PA | 1..821 | 9..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:12 Download gff for
MXO52585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc2-RA | 526..1354 | 1..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:55 Download gff for
MXO52585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc2-RA | 497..1325 | 1..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:55 Download gff for
MXO52585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20417586..20417667 | 1..82 | 96 | -> | Plus |
| 2L | 20420319..20420412 | 83..176 | 100 | -> | Plus |
| 2L | 20420490..20420589 | 177..276 | 100 | -> | Plus |
| 2L | 20420648..20420834 | 277..463 | 100 | -> | Plus |
| 2L | 20420897..20421117 | 464..684 | 100 | -> | Plus |
| 2L | 20422145..20422236 | 685..776 | 100 | -> | Plus |
| 2L | 20422302..20422354 | 777..829 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:12 Download gff for
MXO52585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20417586..20417667 | 1..82 | 96 | -> | Plus |
| arm_2L | 20420319..20420412 | 83..176 | 100 | -> | Plus |
| arm_2L | 20420490..20420589 | 177..276 | 100 | -> | Plus |
| arm_2L | 20420648..20420834 | 277..463 | 100 | -> | Plus |
| arm_2L | 20420897..20421117 | 464..684 | 100 | -> | Plus |
| arm_2L | 20422145..20422236 | 685..776 | 100 | -> | Plus |
| arm_2L | 20422302..20422354 | 777..829 | 100 | | Plus |
