MXO52586.5prime Sequence
831 bp (729 high quality bases) assembled on 2007-04-11
> MXO52586.5prime
CAGTCGACATGAGCAAATCACTCTTTGATCTTCCGTTGACCATTGAACCA
GAACATGAGTTGCGTTTTGTGGGTCCCTTCACCCGACCCGTTGTCACAAT
CATGACTCTGCGCAACAACTCGGCTCTGCCTCTGGTCTTCAAGATCAAGA
CAACCGCCCCGAAACGCTACTGCGTACGTCCAAACATCGGCAAGATAATT
CCCTTTCGATCAACCCAGGTGGAGATCTGCCTTCAGCCATTCGTCTACGA
TCAGCAGGAGAAGAACAAGCACAAGTTCATGGTGCAGAGCGTCCTGGCAC
CCATGGATGCTGATCTAAGCGATTTAAATAAATTGTGGAAGGATCTGGAG
CCCGAGCAGCTGATGGACGCCAAACTGAAGTGCGCTTTCGAGATGCCCAC
CGCTGAGGCAAATGCTGAGAACACCAGCGGTGGTGGTGCCGTTGGCGGCG
GAACCGGAGCTGCCGGAGGCGGAAGCGCGGGTGCCAATACTAGCTCAGCC
AGCGCTGAGGCGCTCGAGAGCAAGCCGAAGCTCTCCAGCGAGGATAAGTT
TAAGCCATCCAATTTGCTCGAAACGTCTGAGAGTCTGGACTTGCTGTCCG
GAGAGATCAAAGCGCTGCGTGAATGCAACATTGAATTGCGAAGAGAGAAT
CTTCACTTGAAGGATCAAATCACACGTTTCCGGAGCTCGCCGGCCGTCAA
ACAGGTGAATGAGCCCTATGCCCCAGTCCTGGCTGAGAAGCAGATTCCGG
TCTTTTACATTGCAGTTGCCATTGCTGCGGCCATCGTTAGCCTCCTGCTG
GGCAAATTCTTTCTCGCAAGCTTTCTAGACC
MXO52586.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5014-PB | 810 | Vap-33-1-RB | 1..807 | 9..815 | 4010 | 99.8 | Plus |
| CG5014-PC | 810 | Vap-33-1-RC | 1..807 | 9..815 | 4010 | 99.8 | Plus |
| CG5014-PD | 717 | Vap-33-1-RD | 1..714 | 102..815 | 3545 | 99.8 | Plus |
| CG5014-PA | 708 | Vap-33-1-RA | 1..401 | 9..409 | 1980 | 99.7 | Plus |
| CG5014-PA | 708 | Vap-33-1-RA | 393..705 | 503..815 | 1565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vap-33A-RE | 3897 | CG5014-RE | 568..1374 | 9..815 | 4020 | 99.9 | Plus |
| Vap-33A-RC | 3607 | CG5014-RC | 278..1084 | 9..815 | 4020 | 99.9 | Plus |
| Vap-33A-RB | 2541 | CG5014-RB | 568..1374 | 9..815 | 4020 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3951828..3952041 | 335..548 | 1055 | 99.5 | Plus |
| X | 23542271 | X | 3952761..3952919 | 657..815 | 780 | 99.4 | Plus |
| X | 23542271 | X | 3951414..3951567 | 72..225 | 770 | 100 | Plus |
| X | 23542271 | X | 3952106..3952222 | 547..663 | 585 | 100 | Plus |
| X | 23542271 | X | 3951636..3951745 | 226..335 | 550 | 100 | Plus |
| X | 23542271 | X | 3949650..3949715 | 9..74 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:30:22 has no hits.
MXO52586.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:19 Download gff for
MXO52586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5014-PC | 1..810 | 9..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:53 Download gff for
MXO52586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vap-33-1-RB | 557..1378 | 1..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:56 Download gff for
MXO52586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vap-33A-RB | 557..1378 | 1..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:56 Download gff for
MXO52586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3949639..3949713 | 1..72 | 94 | -> | Plus |
| X | 3951415..3951567 | 73..225 | 100 | -> | Plus |
| X | 3951636..3951745 | 226..335 | 100 | -> | Plus |
| X | 3951829..3952041 | 336..548 | 99 | -> | Plus |
| X | 3952108..3952221 | 549..662 | 100 | -> | Plus |
| X | 3952767..3952924 | 663..820 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:53 Download gff for
MXO52586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3843672..3843746 | 1..72 | 94 | -> | Plus |
| arm_X | 3845448..3845600 | 73..225 | 100 | -> | Plus |
| arm_X | 3845669..3845778 | 226..335 | 100 | -> | Plus |
| arm_X | 3845862..3846074 | 336..548 | 99 | -> | Plus |
| arm_X | 3846141..3846254 | 549..662 | 100 | -> | Plus |
| arm_X | 3846800..3846957 | 663..820 | 98 | -> | Plus |
