MXO52588.5prime Sequence
821 bp (758 high quality bases) assembled on 2007-04-11
> MXO52588.5prime
CAGTCGACATGCCCATTTACGAGAGCGTGATGCAGGAGAAGCCGCCCATT
GTCCTCGACATTGGCACCGCCTACACCAAGCTGGGATTCGCAGCGGAGGC
GTATCCGCGCAAGATCATGCCCACGGAGGTGGTGATGACCACGACGGGGA
TCCGGAAGCGTCTGTTCGACTACGACACTCCGGAGGAGCTGTACGACCAG
CTAGTGGATTTTCTGCAGACGATCTTCTTCAAGCATCTACTGGTCAGCCC
CAAGGAGCGCAAGTTCGTGCTGGTGGAGAACGTGTTCGGATCCACTGTGC
TGCGTGAAACCTTGGCCCGCGTGCTCTTTGTCCACTTCGACGTCTCCTCC
GTGCTGTTCGTGCCCGTGCATCTCATTGCGCTGTCTACGCTGGCAGTGCC
CACTGCCCTTGTGGTGGACGTTGGCTACAGCGAGACCAGCGTTATGCCCG
TCTTCAGCGGGGTGCAAATCATGGCCGCCTTCAAGGATCAGAGCTACGGA
GGCAGCGCCATCCACGCGGAGATCAAGCGGCAGCTGGTTGAGAGTGGCGT
TAAGGAGAGCCTGCTAACAGAAAGCGTGCTGGAGGACATCAAGGTGCGAA
CCTGCTTTGTGACCACCATGGAAAGAGCCAAGGCCCGCGCCAACGGCGAC
GAGAATCAGCCGACTCCCGCGCCAGACGTGGACTACATTGTCAGCGACAA
CGATGCGGTCATCCAGGTGCCCGGCCTCCTGCGGGAGTCTGCCTACGAGA
TCATGTTCGAGGCCAGCAACGAGCGGGACAGCCTGCCGCATCTCATCCTG
CGCTCCATTCTCGACTGCACA
MXO52588.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12235-PA | 1137 | Arp11-RA | 1..813 | 9..821 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp10-RB | 1536 | CG12235-RB | 261..1073 | 9..821 | 4065 | 100 | Plus |
| Arp10-RA | 1374 | CG12235-RA | 99..911 | 9..821 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19644994..19645582 | 821..233 | 2945 | 100 | Minus |
| X | 23542271 | X | 19645632..19645785 | 233..80 | 770 | 100 | Minus |
| X | 23542271 | X | 19645845..19645916 | 80..9 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:37:59 has no hits.
MXO52588.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:20 Download gff for
MXO52588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12235-PA | 1..812 | 9..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:39 Download gff for
MXO52588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp10-RA | 91..910 | 1..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:23 Download gff for
MXO52588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp10-RA | 91..910 | 1..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:23 Download gff for
MXO52588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19644995..19645582 | 233..820 | 100 | <- | Minus |
| X | 19645633..19645785 | 80..232 | 100 | <- | Minus |
| X | 19645846..19645924 | 1..79 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:39 Download gff for
MXO52588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19539028..19539615 | 233..820 | 100 | <- | Minus |
| arm_X | 19539666..19539818 | 80..232 | 100 | <- | Minus |
| arm_X | 19539879..19539957 | 1..79 | 96 | | Minus |
