MXO52592.5prime Sequence
943 bp (775 high quality bases) assembled on 2007-04-11
> MXO52592.5prime
CAGTCGACATGTCGGAAGAAGCGGCTAGCACCTCGTCCTTTGGCTTCAAG
AAGCGGAACCTCAAGAAGGGAGCTGGAATTCGTCGCAAAAAGGAAACCAG
CAGTGATGAATCTGCAAAAAGCAGCGATGAAGAGACCAAAGGCAAAGCCA
GTGCTCTGGTGCGAGCCGAGAACCGCCGAAAGCGCACGAATCCCAACTTC
CAGAGCACCAAGACAATGAGCAAAGCAAAGAGACAGGCGGGAGGAGTTGG
TGATGATGGCTCATCCTCAGCCTCCGACGATGATAAACTGGGCATTGCGT
ACAAATCCAAACGCGAGGCGCTGCCCAGTGGACCCCAAGATCAGGGAGCT
ACATCGATTAACGAAATGGACACAGAATTGGATCGCGATGCGCAGGCAAT
TCATGCGCGAGCTCTGAAAATCAACGAAGAGCTGGAGGGCAAGGCGGACG
ATAAGATCTATCGCGGAATTAACAACTATGCGCAGTACTACAAGAAGCAG
GATACAGCGGCAGGGAATGCCAGCTCCGGAATGGTACGAAGTGGCCCAAT
TAGGGCTCCTGCCCATCTTAGGGCCACTGTCAGGTGGGATTATCAGCCGG
ATATATGCAAGGATTACAAGGAAACAGGATATTGCGGCTTTGGCGACAGC
TGTAAGTTTCTGCACGATCGCAGTGATTACAAAGCGGGCTGGCAATTGGA
AATGGATCACGAAAATCAGCGAACGGGTGATGTAGACTCCGATGGCGATG
ATACCAAGTATGAGATTCACTCCGATGAAGAAACACTGCCTTTCAAGTGC
CACATCTGCCGACAGAGTTTTGTCAATCCCGTGGTACAAAGTGCAAGCAC
TATTTCTGTGAAAAGTGCGCCTTGGCCCAGTACAAAAAGTCACAGCGCTG
CATCATCTGGTTCCAGCAAACAAATGGTATTTTTCAATCCCGC
MXO52592.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4973-PA | 1074 | CG4973-RA | 1..935 | 9..943 | 4550 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdlc-RA | 1419 | CG4973-RA | 107..1041 | 9..943 | 4600 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20058017..20058739 | 114..836 | 3615 | 100 | Plus |
| 3R | 32079331 | 3R | 20057854..20057959 | 9..114 | 530 | 100 | Plus |
| 3R | 32079331 | 3R | 20058812..20058904 | 841..933 | 435 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:38:10 has no hits.
MXO52592.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:22 Download gff for
MXO52592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4973-PA | 1..935 | 9..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:48 Download gff for
MXO52592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4973-RA | 100..1041 | 1..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:28 Download gff for
MXO52592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mdlc-RA | 100..1041 | 1..943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:28 Download gff for
MXO52592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20057847..20057959 | 1..114 | 96 | -> | Plus |
| 3R | 20058018..20058744 | 115..840 | 99 | -> | Plus |
| 3R | 20058812..20058913 | 841..943 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:48 Download gff for
MXO52592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15883569..15883681 | 1..114 | 96 | -> | Plus |
| arm_3R | 15883740..15884466 | 115..840 | 99 | -> | Plus |
| arm_3R | 15884534..15884635 | 841..943 | 97 | | Plus |
