MXO52596.5prime Sequence
1115 bp (995 high quality bases) assembled on 2010-12-10
> MXO52596.5prime
AGATCGAGATGAGCAGCACCTTCCGGCCGCCATGGCTGGAGCTGCCTTCT
GCATTGGTCTCAAGTACGCCGGCACTGAGAATCTGGTGGCCTTTGCCACG
CTGCGGTCGGTGATAAAGGATTTCCTTCGCTTCCCCAGCAGGCCGATGGG
CGAATGTGCCGGTCGCACCACTGTGGAGAGCTGCCTGATGGTGCTGCTCA
TCTCGATCTCGTTGGTGTTCGCCGGCTCCGGCAACTGCGAAATTCTTCGC
ATAATTCGGTTTCTCAGGTCGCGAGTGGGACCACAATATCCGCACATAAC
CTACGGCTCTCACATGGCCATACACATGTCGCTTGGCCTGCTATTCCTCG
GCGCGGGTCGCTTCACCATTTCCCAGACACCGGAGTCGATTGCTGCACTG
GTTTGCGCCTCCTTCCCCAAGTTTCCCATACACAGCAACGACAATCGATA
CCATCTGCAAGCGCTGAGACATCTCTATGTACTGGCTGTGGAACCGCGCC
TGTTCCTTCCCCGGGACATTGACACCAATAAGCTGTGCCTGGCCAACATA
TCCGTGTTGGAGGTGGGTGCCACCGAGCTGCGCCGCCTGCCCATCGCTCC
CTGCATCCTGCCAGTGCTGAGCACCCTGCAGCAGGTGGTGGTGGACGACG
AGAACTATTGGCCAGTGTGCTTCGAGCGATCGCGCAACTGGGATCAGCTG
GAAAAGGCGCTGGAGATGAGTGCACCGATTGATATTAAGAAGCGAACGGG
CTGCCTTTCCCACTTGGAGGACCCGGACAGGCTGAAGAGCATGCTGGCCC
AAACATTGACGATGGAACAGAGCATCTGTTGGCAGATCGATATGAACGAC
CTGCAGCAGTTTGCCAGCGAACGTATGGTGAAGCAGTTCCTCAGTCGCTG
CCTGCACACCAAAGGCACGGATTTGAGTCCCCCGGAGCTGATGAGCGGCA
CAGTGATGCTGCTATTCTACATGCCGTGTCAGATCGCATGCATTTCTGCG
TTTACCTACCCTATACGATCACGTACAGTCATGCGACAACATCGATGTGT
GGCAGATGAGCTCATCGATGCCTATTTGATTCGCAGCCAGAGTCCGAGCA
TCCCGCCCTCATCTC
MXO52596.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-29 13:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shtd-RA | 6481 | CG9198-RA | 4723..5814 | 31..1103 | 4955 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-29 13:04:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15456418..15456945 | 971..447 | 2495 | 99.1 | Minus |
| X | 23542271 | X | 15457009..15457425 | 447..31 | 2055 | 99.5 | Minus |
| X | 23542271 | X | 15456211..15456280 | 1103..1036 | 235 | 95.7 | Minus |
Blast to na_te.dros performed on 2015-01-29 13:04:55 has no hits.
MXO52596.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:44:31 Download gff for
MXO52596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shtd-RB | 22..1122 | 31..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:08:46 Download gff for
MXO52596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shtd-RA | 4723..5823 | 31..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-29 14:12:51 Download gff for
MXO52596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shtd-RA | 4723..5823 | 31..1115 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-29 14:12:51 Download gff for
MXO52596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15456358..15456944 | 448..1027 | 97 | <- | Minus |
| X | 15457009..15457422 | 34..447 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:08:46 Download gff for
MXO52596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15350391..15350977 | 448..1027 | 97 | <- | Minus |
| arm_X | 15351042..15351455 | 34..447 | 99 | <- | Minus |
