MXO52601.5prime Sequence
807 bp (661 high quality bases) assembled on 2007-04-02
> MXO52601.5prime
CAGTCGACATGGCGCGTCTGCGGCTTCTAATCGGTCTTATATTCTGCCTT
GCGATCAGCTTGGATTCGGTGCTTAGTGCCCCAGTGATCAGCCAGATCAG
CAAGGACGTGGTGGCCAGTGTGGGCGACTCTGTGGAGTTCAACTGCACCG
TGGAGGAGGTGGGACAGCTCTCGGTGAGCTGGGCCAAGCGTCCCAGCGAG
TCGGACACCAACTCGGTGGTGCTCTCCATGCGGAATATCCTCAGTCTGCC
CGACCAGCGGTACAACGTAACGGTCACCGAAGGACCCAAGACCGGAAGTG
CCATTTACACCTTCCGCATTCAGAACATCGAAGTCAGTGACATGGGTCCG
TACGAGTGTCAGGTGCTTGTTTCGGCCACGGAGAAGGTGACCAAGAAGCT
GAGCCTGCAGATCAAGACCCCGCCGGTGATTGCGGAGAACACCCCCAAGA
GCACCCTGGTGACAGAGGGACAGAATCTGGAGCTGACCTGCCATGCCAAT
GGCTTTCCCAAGCCTACGATCTCCTGGGCCCGCGAGCATAATGCAGTGAT
GCCTGCCGGTGGCCATTTGCTGGCCGAACCAACTCTCCGGATTCGTTCCG
TGCACCGGATGGATCGCGGCGGCTACTACTGCATCGCGCAGAACGGAGAG
GGCCAGCCGGACAAGAGGTTGATCCGGGTCGAAGTGGAGTTCCGTCCGCA
GATTGCCGTCCAGAGGCCCAAGATCGCCCAAATGGTGTCCCATTCCGCGG
AGCTGGAGTGCTCCGTGCAGGGCTACCCGGCTCCGACTGTAGTTTGGCAC
AAGAATG
MXO52601.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2198-PB | 1026 | Ama-RB | 22..823 | 6..807 | 4010 | 100 | Plus |
| CG2198-PA | 1002 | Ama-RA | 1..799 | 9..807 | 3995 | 100 | Plus |
| CG2198-PC | 1002 | Ama-RC | 1..799 | 9..807 | 3995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ama-RC | 1526 | CG2198-RC | 102..903 | 6..807 | 4010 | 100 | Plus |
| Ama-RA | 1542 | CG2198-RA | 118..919 | 6..807 | 4010 | 100 | Plus |
| Ama-RB | 1833 | CG2198-RB | 409..1210 | 6..807 | 4010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6763837..6764638 | 6..807 | 4010 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:17:37 has no hits.
MXO52601.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:23 Download gff for
MXO52601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2198-PB | 20..823 | 1..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:13 Download gff for
MXO52601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ama-RB | 407..1210 | 1..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:02 Download gff for
MXO52601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ama-RB | 407..1210 | 1..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:02 Download gff for
MXO52601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6763830..6764638 | 1..807 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:13 Download gff for
MXO52601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2589552..2590360 | 1..807 | 99 | | Plus |
