MXO52602.5prime Sequence
992 bp (992 high quality bases) assembled on 2010-12-10
> MXO52602.5prime
GAATGCATTCTACACGAAGTTATCAGTCGACATGGGCTACGATGTGAATC
GCTTTCAGGGGGAGGTGGACGAGGAGCTCACCTGTCCCATCTGCTCCGGA
GTGCTTGAGGATCCGCTGCAGGCCGTGATGTGCGAGCACGCCTTCTGCCG
CGGATGCATTAACGAGTGGCTAACCCGCCAGCCCACTTGTCCGGTGGATC
GAAATTCCCTGACTACTGCCAACTTGCGGGCAGTGCCTCGCATATTGCGC
AACCTACTGTCCAGACTGTCAATCACCTGTGACAATGCGCCTTATGGCTG
CACGGCTGTTCTCAAGCTAGACGCCTACAATTCCCATTTGGACGAATGCA
TTCACAATCCGAAGCGACCATTTCCCTGCGAGAAGGGATGCGGCTTTGAC
ATACCCAAGGATGAGCTAAAGGACCACAACTGCGTGCGGGAGCTGCGCAC
TTTAATTGTCAAGCAGACGGAAAAAATGGGTGAGCTCAAATCGGAGCTCA
CCGACCAGCAGCTGACTATCAACGAACTGAAGCGCGAGCTGCAGCTATTC
AAGGACTTTATGCGTGCCATGCGCGTCTCCAATCCTGCGATGCGGGCCAT
AGCCGACCAGATGGAGCGCGACGAGGTGATCCGCTGGAGCAGCACACTGC
CCCGGGCCAGGGTTACGCGCTGGGGGGGAATGATCTCTACGCCCGACGAT
GCACTGCAGCTCATGATCAAGCGCGCTTTGTCCGAGTCGGGCTGTCCGCC
ACACATCCTGGATAGTCTTATGGAGTTCTGCCACGAGCGACGTTGGCCCC
GTGGGCTCAGTTCGCTAGAGACACGTCAAACCAATCGTAGGATCTACGAC
AACTATGTGTGTCGACGCATTCCAGGCAAGCAAGCTGTGCTCGTTTTGAG
CTGCGACACCTCCACATGACTGAGACGTCATGATCGATCCAGGTTTGGTC
ATGATCTTCGCCCATGGCATCGAGGCAAGCTTTCTAAACCAT
MXO52602.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-29 13:04:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| elgi-RB | 1534 | CG17033-RB | 124..1068 | 32..974 | 4675 | 99.8 | Plus |
| elgi-RA | 1611 | CG17033-RA | 201..1145 | 32..974 | 4675 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-29 13:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15957135..15957583 | 261..709 | 2245 | 100 | Plus |
| 3L | 28110227 | 3L | 15957637..15957805 | 708..876 | 845 | 100 | Plus |
| 3L | 28110227 | 3L | 15956920..15957065 | 119..264 | 730 | 100 | Plus |
| 3L | 28110227 | 3L | 15956750..15956840 | 32..122 | 455 | 100 | Plus |
| 3L | 28110227 | 3L | 15957864..15957967 | 873..974 | 420 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-01-29 13:04:40 has no hits.
MXO52602.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:44:30 Download gff for
MXO52602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| elgi-RA | 201..1150 | 32..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:08:45 Download gff for
MXO52602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| elgi-RA | 201..1150 | 32..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-29 14:12:49 Download gff for
MXO52602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| elgi-RA | 201..1150 | 32..980 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-29 14:12:49 Download gff for
MXO52602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15956750..15956839 | 32..121 | 100 | -> | Plus |
| 3L | 15956923..15957065 | 122..264 | 100 | -> | Plus |
| 3L | 15957139..15957583 | 265..709 | 100 | -> | Plus |
| 3L | 15957639..15957804 | 710..875 | 100 | -> | Plus |
| 3L | 15957867..15957972 | 876..980 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:08:45 Download gff for
MXO52602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15949850..15949939 | 32..121 | 100 | -> | Plus |
| arm_3L | 15950023..15950165 | 122..264 | 100 | -> | Plus |
| arm_3L | 15950239..15950683 | 265..709 | 100 | -> | Plus |
| arm_3L | 15950739..15950904 | 710..875 | 100 | -> | Plus |
| arm_3L | 15950967..15951072 | 876..980 | 95 | | Plus |
