MXO52603.5prime Sequence
810 bp (321 high quality bases) assembled on 2007-04-02
> MXO52603.5prime
CAGTCGACATGCTGCTACAAAGGTTTTTCACACGCGCACTTCACTCCACG
CGGCAGCTTTATGCCGGCTCTGGCGGATCCGGTGGCCTGGAGAAGAGTGC
CCTGGCGGCGCTGAGGAAGAAAACCGGATACACCTTCGCCAATTGCAAGA
AGGCGCTGGAGAAGCACAACAACGACGTCGGATTGGCTGAAAAGTGGCTG
CACGAGCAGGCCCAGACCCTCGGCTGGTCGAAGGCCACCAAGGTCGCATA
TCGAGCCACTGCACATGGTCTGATTGGAGTGCTCATCCGCGGAAACCGGG
GCGCCATGGTCGAGCTGAATTGCGAGACGGATTTCGTAGCCAGGAACGAT
ACCTTCAAGCGGTTCGTTGACCACTTCTCCTGCATGTGTCTGCAATACAC
GGACTTGACGGACTTCGATGGAGATCTGTGGAAGCTTGGCTTTGATGCGG
ACGCCCTCAGAAACTTGCGCACGGAGGAGGGACGCACGTTGGGCGACCAC
CTGGCTCTGCTGATCGGCGCCATCGGGGAGAATGCCACCATCCGGCGCGC
ATTGTGCTTTAAGGCTAACAACGACCTGAAGCTGGTGGGCTACGCCCATC
CCGCACCCACCAATGTGGGCACCACGGAAGGCATCACCCAGGTGGGCAGG
TACCGAGCGATCGTAGCCTACCGATCCACGCACCCCCTGCTGGACTTTGA
GTTTCACAAGAGCATTTGCCAGCAAATCGTGCGCATGAAGCCGACAAAGA
TCGGCGAATATGACAAGGACAAGCCGGCGGAGAACAAAGACGATGAAACG
TGCCTGATTC
MXO52603.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6412-PA | 957 | CG6412-RA | 1..802 | 9..810 | 3810 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6412-RA | 1526 | CG6412-RA | 439..1240 | 9..810 | 3890 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17499554..17499931 | 810..433 | 1815 | 98.7 | Minus |
| 2L | 23513712 | 2L | 17500035..17500284 | 434..185 | 1205 | 98.8 | Minus |
| 2L | 23513712 | 2L | 17500491..17500668 | 186..9 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:10:11 has no hits.
MXO52603.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:23 Download gff for
MXO52603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6412-PA | 1..802 | 9..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:39 Download gff for
MXO52603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6412-RA | 439..1240 | 9..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:41 Download gff for
MXO52603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6412-RA | 439..1240 | 9..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:41 Download gff for
MXO52603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17499554..17499929 | 435..810 | 98 | <- | Minus |
| 2L | 17500035..17500283 | 186..434 | 98 | <- | Minus |
| 2L | 17500492..17500668 | 9..185 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:39 Download gff for
MXO52603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17499554..17499929 | 435..810 | 98 | <- | Minus |
| arm_2L | 17500035..17500283 | 186..434 | 98 | <- | Minus |
| arm_2L | 17500492..17500668 | 9..185 | 100 | | Minus |
