MXO52606.5prime Sequence
899 bp (811 high quality bases) assembled on 2007-04-02
> MXO52606.5prime
CAGTCGACATGGCCAGTTTCCAGATCCACCAAGACATGAGCAACAAGGAG
AATCCGGGCATTAAGATTCCGGCCGGAGTGAAGAACACCAAGCAGCCGCT
GGCCGTAATTGGGGGAAAAGCGGAGAAAAATGCGCTTGCGCCGCGGGCCA
ATTTCGCCGTGCTCAATGGCAACAACAATGTGCCGCGTCCGGCCGGGAAA
GTTCAGGTCTTCCGTGACGTCAGAAATCTTAATGTTGATGAGAATGTGGA
GTACGGCGCCAAGAAATCGAATGTGGTGCCCGTGGTGGAGCAATTCAAGA
CCTTCTCCGTGTATGAGGACAACAACGATACCCAGGTTGCGCCATCCGGC
AAATCCCTGGCCTCCCTAGTCGACAAAGAGAACCATGACGTGAAATTCGG
TGCTGGGCAGAAGGAGCTGGTAGACTACGATCTGGATTCAACACCCATGT
CCGTGACGGATGTTCAGTCCCCCATGTCCGTGGACCGCTCCATTCTCGGT
GTCATACAGTCCAGTGATATCAGCGTGGGCACTGAAACGGGAGTCTCGCC
AACTGGAAGAGTCAAGGAGCTTCCGCCGCGCAACGATCGCCAGCGGTTCC
TGGAAGTGGTTCAGTACCAGATGGACATTCTGGAATATTTCCGGGAGAGC
GAGAAGAAACATCGCCCCAAGCCACTCTATATGCGCAGACAGAAGGACAT
TAGCCACAATATGCGCTCCATCCTTATTGATTGGCTGGTTGAGGTTTCCG
AGGAGTACAAACTGGACACGGAGACGCTCTATCTCTCGGTCTTTTATCTA
GATCGATTTTTGAGCCAAATGGCGGTGGTGCGCTCCAAGTTACAGCTGGT
GGGCACGGCAGCTATGTATATTGCCCGCAAATACGAGGAAATCTATCCC
MXO52606.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5940-PA | 1476 | CycA-RA | 1..867 | 9..875 | 4335 | 100 | Plus |
| CG5940-PB | 1038 | CycA-RB | 1..429 | 447..875 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycA-RA | 2555 | CG5940-RA | 510..1401 | 8..899 | 4415 | 99.8 | Plus |
| CycA-RC | 2916 | CG5940-RC | 510..1398 | 8..899 | 4360 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11831727..11831982 | 653..398 | 1280 | 100 | Minus |
| 3L | 28110227 | 3L | 11828463..11828686 | 875..652 | 1120 | 100 | Minus |
| 3L | 28110227 | 3L | 11832874..11833069 | 203..8 | 980 | 100 | Minus |
| 3L | 28110227 | 3L | 11832053..11832246 | 397..204 | 970 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:39:38 has no hits.
MXO52606.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:26 Download gff for
MXO52606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5940-PA | 1..891 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:40 Download gff for
MXO52606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycA-RA | 502..1401 | 1..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:11 Download gff for
MXO52606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycA-RA | 502..1401 | 1..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:11 Download gff for
MXO52606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11828461..11828684 | 654..878 | 99 | <- | Minus |
| 3L | 11831727..11831982 | 398..653 | 100 | <- | Minus |
| 3L | 11832053..11832246 | 204..397 | 100 | <- | Minus |
| 3L | 11832874..11833072 | 1..203 | 98 | | Minus |
| 3L | 11828371..11828392 | 879..899 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:40 Download gff for
MXO52606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11821471..11821492 | 879..899 | 95 | <- | Minus |
| arm_3L | 11824827..11825082 | 398..653 | 100 | <- | Minus |
| arm_3L | 11825153..11825346 | 204..397 | 100 | <- | Minus |
| arm_3L | 11821561..11821784 | 654..878 | 99 | <- | Minus |
| arm_3L | 11825974..11826172 | 1..203 | 98 | | Minus |
