MXO52607.5prime Sequence
906 bp (787 high quality bases) assembled on 2007-04-02
> MXO52607.5prime
CAGTCGACATGAGCGGTCGTCCAAGAACTTCCTCCTTCGCCGAGGGCAAC
AAACAGTCGCCGAGTTTGGTGCTGGGCGGCGTCAAAACATGCAGTCGCGA
TGGTTCTAAAATCACAACAGTTGTTGCAACACCCGGCCAAGGCACCGATC
GCGTACAAGAGGTCTCCTATACAGACACAAAGGTCATCGGCAATGGCAGC
TTCGGCGTCGTGTTCCAGGCAAAGCTCTGCGATACCGGCGAACTGGTGGC
AATCAAAAAAGTTTTACAAGACAGACGATTTAAGAATCGCGAATTGCAAA
TAATGCGCAAATTGGAGCATTGTAATATTGTGAAGCTTTTGTACTTTTTC
TATTCGAGTGGTGAAAAGCGTGATGAATTATTTTTGAATTTAGTCCTCGA
ATATATACCAGAAACCGTATACAAAGTGGCTCGCCAATATGCCAAAACCA
AGCAAACGATACCAATCAACTTTATTCGGCTCTACATGTATCAACTGTTC
AGAAGTTTGGCCTACATCCACTCGCTGGGCATTTGCCATCGTGATATCAA
GCCGCAGAATCTTCTGCTCGATCCGGAGACGGCTGTGCTGAAGCTCTGTG
ACTTTGGCAGCGCCAAACAGCTGCTGCACGGCGAGCCGAATGTATCGTAT
ATCTGCTCCCGGTATTACCGCGCCCCCGAGCTCATCTTTGGCGCCATCAA
TTATACAACAAAGATCGATGTCTGGAGTGCCGGTTGCGTTTTGGCCGAAC
TGCTGCTGGGCCAGCCCATCTTCCCTGGCGATTCCGGTGTGGATCAGCTC
GTCGAGGTCATCAAGGTCCTGGGCACACCGACAAGAGAACAGATACGCGA
AATGAATCCAAACTACACGGAATTTCAGTTCCCTCAGATTAAGAGTCATC
CATGGC
MXO52607.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2621-PH | 1545 | sgg-RH | 1..898 | 9..906 | 4415 | 99.6 | Plus |
| CG2621-PI | 1545 | sgg-RI | 1..898 | 9..906 | 4415 | 99.6 | Plus |
| CG2621-PJ | 1728 | sgg-RJ | 1..898 | 9..906 | 4415 | 99.6 | Plus |
| CG2621-PB | 1545 | sgg-RB | 1..898 | 9..906 | 4415 | 99.6 | Plus |
| CG2621-PA | 1728 | sgg-RA | 1..898 | 9..906 | 4415 | 99.6 | Plus |
| CG2621-PE | 1545 | sgg-RE | 1..898 | 9..906 | 4415 | 99.6 | Plus |
| CG2621-PF | 1545 | sgg-RF | 1..898 | 9..906 | 4415 | 99.6 | Plus |
| CG2621-PC | 1545 | sgg-RC | 1..898 | 9..906 | 4415 | 99.6 | Plus |
| CG2621-PL | 1761 | sgg-RL | 119..931 | 94..906 | 3990 | 99.6 | Plus |
| CG2621-PD | 3204 | sgg-RD | 1745..2557 | 94..906 | 3990 | 99.6 | Plus |
| CG2621-PG | 1491 | sgg-RG | 32..844 | 94..906 | 3990 | 99.6 | Plus |
| CG2621-PK | 1251 | sgg-RK | 1..604 | 303..906 | 2945 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgg-RC | 3110 | CG2621-RC | 549..1446 | 9..906 | 4445 | 99.7 | Plus |
| sgg-RF | 4244 | CG2621-RF | 647..1544 | 9..906 | 4445 | 99.7 | Plus |
| sgg-RE | 3055 | CG2621-RE | 494..1391 | 9..906 | 4445 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2671307..2671545 | 479..717 | 1195 | 100 | Plus |
| X | 23542271 | X | 2669913..2670103 | 94..284 | 955 | 100 | Plus |
| X | 23542271 | X | 2671628..2671817 | 717..906 | 920 | 98.9 | Plus |
| X | 23542271 | X | 2671119..2671231 | 367..479 | 550 | 99.1 | Plus |
| 3R | 32079331 | 3R | 31373036..31373316 | 546..826 | 490 | 78.3 | Plus |
| X | 23542271 | X | 2642009..2642095 | 9..95 | 435 | 100 | Plus |
| X | 23542271 | X | 2670172..2670257 | 283..368 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:51:24 has no hits.
MXO52607.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:27 Download gff for
MXO52607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2621-PB | 1..898 | 9..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:32 Download gff for
MXO52607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RE | 483..1391 | 1..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:05 Download gff for
MXO52607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RE | 483..1391 | 1..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:05 Download gff for
MXO52607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2641998..2642093 | 1..93 | 95 | -> | Plus |
| X | 2669913..2670103 | 94..284 | 100 | -> | Plus |
| X | 2670174..2670257 | 285..368 | 100 | -> | Plus |
| X | 2671121..2671231 | 369..479 | 99 | -> | Plus |
| X | 2671308..2671545 | 480..717 | 100 | -> | Plus |
| X | 2671629..2671817 | 718..906 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:32 Download gff for
MXO52607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2536031..2536126 | 1..93 | 95 | -> | Plus |
| arm_X | 2563946..2564136 | 94..284 | 100 | -> | Plus |
| arm_X | 2564207..2564290 | 285..368 | 100 | -> | Plus |
| arm_X | 2565154..2565264 | 369..479 | 99 | -> | Plus |
| arm_X | 2565341..2565578 | 480..717 | 100 | -> | Plus |
| arm_X | 2565662..2565850 | 718..906 | 98 | | Plus |
