MXO52608.5prime Sequence
645 bp (645 high quality bases) assembled on 2007-04-02
> MXO52608.5prime
CAGTCGACATGGCCAAAACCTACGACTATCTGTTCAAACTGCTCCTGATC
GGTGACTCCGGAGTGGGCAAGACCTGCATCCTCTTCCGATTCTCTGAGGA
CGCCTTCAACACAACGTTTATATCCACAATAGGTATCGATTTTAAAATTA
GAACAATTGAATTAGATAACAAGAAGATTAAGCTGCAGATATGGGACACT
GCCGGCCAGGAGCGTTTTCGCACAATCACCACGGCCTATTACAGAGGTGC
CATGGGCATCATGCTGGTATATGACATAACCCAAGAAAAGTCCTTCGAGA
ACATCAAAAACTGGATCAGGAATATCGAGGAAAATGCGTCCGCCGATGTC
GAGAAAATGCTGCTGGGAAACAAGTGCGAATTGACCGATAAGCGACAGGT
TTCAAAAGAGCGCGGCGAACAATTGGCCATCGAGTATGGCATCAAGTTCA
TGGAGACCTCCGCGAAGGCCAGCATTAACGTGGAAGAAGCCTTCCTCACC
CTAGCCAGTGATATCAAAGCGAAAACGGAAAAGCGAATGGAGGCGAACAA
CCCACCCAAGGGCGGCCATCAGCTGAAACCGATGGACAGTCGGACGAAGG
ACAGTTGGTTGTCCAGGTGCAGTCTGCTTGCAAGCTTTCTAGACC
MXO52608.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:10:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8287-PA | 624 | Rab8-RA | 1..621 | 9..629 | 3105 | 100 | Plus |
| CG17060-PA | 615 | Rab10-RA | 165..209 | 170..214 | 150 | 93.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab8-RC | 2043 | CG8287-RC | 575..1195 | 9..629 | 3105 | 100 | Plus |
| Rab8-RA | 2263 | CG8287-RA | 575..1195 | 9..629 | 3105 | 100 | Plus |
| Rab8-RB | 1068 | CG8287-RB | 50..548 | 131..629 | 2495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19869101..19869308 | 400..193 | 1040 | 100 | Minus |
| 3L | 28110227 | 3L | 19868723..19868866 | 540..397 | 720 | 100 | Minus |
| 3L | 28110227 | 3L | 19870379..19870504 | 134..9 | 630 | 100 | Minus |
| 3L | 28110227 | 3L | 19868556..19868646 | 629..539 | 455 | 100 | Minus |
| 3L | 28110227 | 3L | 19869367..19869430 | 194..131 | 320 | 100 | Minus |
| X | 23542271 | X | 20252275..20252409 | 170..304 | 315 | 82.2 | Plus |
| X | 23542271 | X | 20251640..20251759 | 15..134 | 225 | 79.2 | Plus |
| 3R | 32079331 | 3R | 21114776..21114868 | 185..277 | 180 | 79.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:52:14 has no hits.
MXO52608.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:27 Download gff for
MXO52608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8287-PA | 1..624 | 9..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:39 Download gff for
MXO52608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab8-RA | 567..1195 | 1..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:34 Download gff for
MXO52608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab8-RA | 567..1195 | 1..629 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:34 Download gff for
MXO52608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19868556..19868645 | 540..629 | 100 | <- | Minus |
| 3L | 19868724..19868864 | 399..539 | 100 | <- | Minus |
| 3L | 19869103..19869307 | 194..398 | 100 | <- | Minus |
| 3L | 19869368..19869428 | 133..193 | 100 | <- | Minus |
| 3L | 19870381..19870510 | 1..132 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:39 Download gff for
MXO52608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19861656..19861745 | 540..629 | 100 | <- | Minus |
| arm_3L | 19861824..19861964 | 399..539 | 100 | <- | Minus |
| arm_3L | 19862203..19862407 | 194..398 | 100 | <- | Minus |
| arm_3L | 19862468..19862528 | 133..193 | 100 | <- | Minus |
| arm_3L | 19863481..19863610 | 1..132 | 96 | | Minus |
