MXO52610.5prime Sequence
875 bp (655 high quality bases) assembled on 2007-04-02
> MXO52610.5prime
CAGTCGACATGCACGTGTACTACAAGTTTGGATTACTGCTGATATTTTTG
CTAAGCGTGAGCATCAGCCACACAAATGCCGCTCCAGCGGGCAGTGAGGA
GGCAAATCCCCTCGAGGACTTTAATTACGGCGATGATGACTACAGTGAAA
CAGCGACGGGCGAGGAATAGCAGGAGACAGCAGAAAATAGACTGATGCCA
CAATCATCCTCCACATCGACCACCACCACATTTCGACCAATATTTAATAT
ACCACGACGCAGCAACCATGTCCTGGAGCCCAGTTGCCCGCGCAACTGCC
TCTGCCTGGAGGACTTCAAGTTCGTTCAGTGTGCCAATGCCCATTTGACC
CATGTACCCCTGGACATGCCCAAAACGGCGGCCATCATCGATCTGAGCCA
TAATGTGATTGCCGAACTGAGGCCGGAGGATTTTGCCAATCTGTCCAGGG
CGGTGGAAATCAATTTGAATCACAATCTGATCAGCAGCATAGACAAGGAT
GTCTTTCAGGGATCGGAGCGTTTGAAGCGCCTGCGGCTGGCCAACAACCG
TCTAACCAAAATCGATCCCGACACCTTTGCGGCGGCCAAGGAACTAACGC
TACTCGATTTGAGCAACAACACCATAACCCAGCGCCTGGACGGATCCTTC
TTGAACCAGCCCGACTTGGTGGAGTTCAGCTGCGTCAACTGCAGCTGGAC
GGAACTGCCGGAACAGACGTTCCAGAACATGAGTGGCCTGGAGGTGTTGC
GCTTGAACAAGAACGATTTTAAACAGCAAATCAATACGAAAGCTTTCTCG
CCGCTAACAAAATAATTAAACTGAAGCTGCCGGATCTGGAACAACAGAAC
ATCGAGGAGCTGTGCAGCCTGCTGA
MXO52610.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17667-PA | 1377 | CG17667-RA | 1..804 | 9..812 | 3970 | 99.7 | Plus |
| CG17667-PB | 1377 | CG17667-RB | 1..804 | 9..812 | 3970 | 99.7 | Plus |
| CG17667-PA | 1377 | CG17667-RA | 802..868 | 809..875 | 310 | 98.5 | Plus |
| CG17667-PB | 1377 | CG17667-RB | 802..868 | 809..875 | 310 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42709-RC | 2053 | CG42709-RC | 205..1072 | 9..875 | 4270 | 99.5 | Plus |
| CG42709-RA | 2186 | CG42709-RA | 338..1205 | 9..875 | 4270 | 99.5 | Plus |
| CG42709-RB | 2212 | CG42709-RB | 364..1231 | 9..875 | 4270 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12794381..12794656 | 501..776 | 1380 | 100 | Plus |
| 3L | 28110227 | 3L | 12794062..12794317 | 247..502 | 1280 | 100 | Plus |
| 3L | 28110227 | 3L | 12793814..12794000 | 60..246 | 905 | 98.9 | Plus |
| 3L | 28110227 | 3L | 12794793..12794896 | 773..875 | 455 | 98.1 | Plus |
| 3L | 28110227 | 3L | 12791581..12791633 | 9..61 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:00 has no hits.
MXO52610.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:28 Download gff for
MXO52610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17667-PB | 1..867 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:00 Download gff for
MXO52610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42709-RB | 364..1230 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:26 Download gff for
MXO52610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42709-RB | 364..1230 | 9..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:26 Download gff for
MXO52610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12794381..12794656 | 501..776 | 100 | -> | Plus |
| 3L | 12794797..12794895 | 777..874 | 97 | | Plus |
| 3L | 12794062..12794315 | 247..500 | 100 | -> | Plus |
| 3L | 12791581..12791633 | 9..61 | 100 | -> | Plus |
| 3L | 12793816..12794000 | 62..246 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:00 Download gff for
MXO52610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12784681..12784733 | 9..61 | 100 | -> | Plus |
| arm_3L | 12786916..12787100 | 62..246 | 98 | -> | Plus |
| arm_3L | 12787162..12787415 | 247..500 | 100 | -> | Plus |
| arm_3L | 12787481..12787756 | 501..776 | 100 | -> | Plus |
| arm_3L | 12787897..12787995 | 777..874 | 97 | | Plus |
