MXO52612.5prime Sequence
841 bp (638 high quality bases) assembled on 2007-04-02
> MXO52612.5prime
CAGTCGACATGGCCACCTCATCGATACTCGCCAAAAGCACAATTAATAGC
ACATCGCCACCGGCCACGCCCAGCAGCAGCGCGTCCCCCGGCTCCACACT
GACCACCCGGAAGCGGACCTACGAGATAGCCATTGCCATGCCCTCGTCCA
CCGCCTCCAGCAGCGCCACAAAGGTATCGGAAGTTCAGGATCAGCGCACA
AACAGCCCCGGCAAGTCCAAGAGCAGGCCCGGCCAGCTGGAGAGTGTCTT
GGTGGTCGGCGAGGGAGCCAGCGAGCCCACCACCTCGGCCACCACACTGC
GGGACAGCACACGCACCATCTCACAAAGCGACGCCGACGATGGCGGCGAA
GCGGCAGCCGCCGAGGACCTGCTGCCCCCACAGTCGGATTACCTCAACGG
CGTCAAGCGGAAGTACGTCCCGCAGCAGCAGGCGTCGCCGAATCACCGGG
TGGTGCCCGCATCCACCTCGCAGCAATTCTTCAGCGGGGCCTCCGATTTT
GCGACAATTTGCAAGCCGGCGCCCTACTCTCACGACGAGGAGGCCATGCT
GGAGCGGGATAGATGTGACTACACTCAAAGGATCACCTACCAGATGGCCC
GCTCCGGACAGACGACCCGCAGGGTGAGGGTCTACGCCGATGGCATCTAC
GATCTTTTCCACCAGGGCCACGCCCGCCAACTAATGCAGGCCAAGAACAT
CTTTCCCAACGTGTACTTAATTGTGGGCGTGTGCAACGACGAGCTCACCC
ACCGCATGAAGGGACGCACCGTGATGAACGGCTTCGAGCGATACGAGGGA
GTGCGTCACTGCCGCTATGTGGACGAGATCGTCCAGAATGC
MXO52612.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1049-PA | 1581 | Cct1-RA | 1..833 | 9..841 | 4165 | 100 | Plus |
| CG1049-PD | 1581 | Cct1-RD | 1..833 | 9..841 | 4165 | 100 | Plus |
| CG1049-PB | 1581 | Cct1-RB | 1..833 | 9..841 | 4165 | 100 | Plus |
| CG1049-PC | 1581 | Cct1-RC | 1..833 | 9..841 | 4165 | 100 | Plus |
| CG18330-PA | 1146 | Cct2-RA | 221..308 | 610..697 | 190 | 88.6 | Plus |
| CG18330-PA | 1146 | Cct2-RA | 367..443 | 756..832 | 135 | 87 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cct1-RF | 2754 | CG1049-RF | 296..1128 | 9..841 | 4165 | 100 | Plus |
| Cct1-RE | 2564 | CG1049-RE | 374..1206 | 9..841 | 4165 | 100 | Plus |
| Cct1-RC | 2302 | CG1049-RC | 112..944 | 9..841 | 4165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1550794..1551288 | 9..503 | 2475 | 100 | Plus |
| 3L | 28110227 | 3L | 1551477..1551801 | 503..827 | 1625 | 100 | Plus |
| 3L | 28110227 | 3L | 1554081..1554401 | 507..827 | 720 | 81.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:02:32 has no hits.
MXO52612.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:29 Download gff for
MXO52612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1049-PC | 1..833 | 9..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:45 Download gff for
MXO52612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cct1-RB | 212..1049 | 1..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:17 Download gff for
MXO52612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cct1-RC | 107..944 | 1..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:17 Download gff for
MXO52612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1550789..1551288 | 1..503 | 99 | -> | Plus |
| 3L | 1551478..1551801 | 504..827 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:45 Download gff for
MXO52612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1550789..1551288 | 1..503 | 99 | -> | Plus |
| arm_3L | 1551478..1551801 | 504..827 | 100 | -> | Plus |
