MXO52613.5prime Sequence
780 bp (691 high quality bases) assembled on 2007-04-02
> MXO52613.5prime
CAGTCGACATGTCCCACCACAGCGATGATCAGCTCCTCCAGGCTGGAAGC
GATTCCTTCTGGGAGCCCGGCAACTACAAACGCACCACCAAGCGGATCGA
GGATGGTTACAAACTCTGCAATGACCTACAGCAACTGATTCAGGAGCGTG
CCGACATCGAGAAGGGATATGCGAAAAGCCTGCGCACCTGGTCAAAGAAA
TGGGGTGAACTCATTGAGAAAGGCCCGGAATACGGAACCACGGAGGCAGC
CTGGAAGGGCGTTCTGACGGAATCGGAACGCATCTCCGACGTTCACATGA
AGATCAAGGACAATCTCTGCAACGATGTGAACAGCCAGATAAAGACGTGG
CAGAAGGAGAACTACCACCACACGCTTATGCAGATCAAGGAGCGCAAGGA
CCTGGAGGATCTGTTCAAGAAGGCCCAGAAACCCTGGGCCAAGCTGCTGG
CAAAGGTCGAGAAGGCCAAAGCGGACTACCATTCGGCCTGCAAGACGGAG
CGCAGTGCTACCAATCAGGAACGCAATGCCAATGCCGATAGCTCGTTGTC
GCCGGATCAGGTGAAGAAAATGCACGATCGAGTGCAAAAGACCAAAGATC
AAGTGCAAAAGTGCCGGGAAAAGTACGAGCAGGCGATTGCCGAAATCACC
AAATACAATTCGGTGTACATCGAGGACATGACATCCGTGTTTGAAAAGTG
CCAAACCTTTGAGAAGACGCGTTTGCAGTTCTTCAAAGAAATCCCTGTTC
ACGTGCACTCGTGCCTGGACCTCACAAAAG
MXO52613.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33094-PB | 1485 | Synd-RB | 1..736 | 9..744 | 3680 | 100 | Plus |
| CG33094-PB | 1485 | Synd-RB | 743..772 | 751..780 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Synd-RD | 2287 | CG33094-RD | 79..850 | 9..780 | 3815 | 99.7 | Plus |
| Synd-RC | 2281 | CG33094-RC | 73..844 | 9..780 | 3815 | 99.7 | Plus |
| Synd-RB | 2022 | CG33094-RB | 79..850 | 9..780 | 3815 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20837583..20837924 | 221..562 | 1710 | 100 | Plus |
| 3R | 32079331 | 3R | 20838033..20838254 | 559..780 | 1035 | 97.7 | Plus |
| 3R | 32079331 | 3R | 20835875..20835985 | 113..223 | 555 | 100 | Plus |
| 3R | 32079331 | 3R | 20835228..20835331 | 9..112 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:00:49 has no hits.
MXO52613.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:29 Download gff for
MXO52613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33094-PB | 1..772 | 9..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:39 Download gff for
MXO52613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Synd-RB | 71..850 | 1..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:17 Download gff for
MXO52613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Synd-RB | 71..850 | 1..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:17 Download gff for
MXO52613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20835875..20835984 | 113..222 | 100 | -> | Plus |
| 3R | 20837585..20837922 | 223..560 | 100 | -> | Plus |
| 3R | 20838035..20838254 | 561..780 | 99 | | Plus |
| 3R | 20835222..20835331 | 1..112 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:39 Download gff for
MXO52613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16661597..16661706 | 113..222 | 100 | -> | Plus |
| arm_3R | 16660944..16661053 | 1..112 | 97 | -> | Plus |
| arm_3R | 16663307..16663644 | 223..560 | 100 | -> | Plus |
| arm_3R | 16663757..16663976 | 561..780 | 99 | | Plus |
