MXO52614.5prime Sequence
855 bp (774 high quality bases) assembled on 2007-04-02
> MXO52614.5prime
CAGTCGACATGTCGGTGGAATCCTCCAGTTCGGCGGTCCAACAGCCGCCG
TCGTCCTCGAACCTACCGCTCCTGGGCGACAACCAGGCGGTGGCCACGAC
CAGCTCCGCCTCCTCGGCCTCTTCCTCTTCCACATCGTCGTCCTCCTCGT
CGGTGGGCGGCGGCAATGTGGTGGGCGTGCCGCTGGACACGCAGGGCAGC
GGAGAACCGCCGGCCAAGAAACAGTTGTTGGACGGAGGGGGCGGTGGTGC
CACCAGCAGCAGCGGCAGCAGCTTGCTTTCCAGTGCCGCAGCCGCCTCGG
GAATGCACGAAAAGCTGGCCCACCGCATCTCCAATGCCCTGTGCTGTGCC
GTCTGCCTGGATTTGCCCAAGACGGCCATGTACCACTGCCAGATGGGCCA
TCTGATGTGCGCCGCCTGTTTCACGCATCTGCTGGCGGATGGACGCTTGC
GCGATCAGATTGCCACGTGCCCCAATTGCCGCGTGGAAATTTCTAAGAGC
ACTGCGTCGCGCAACTTGGCCGTGGAGAAGGCCGCCTCAGAATTGCCCAG
CGAGTGTCAATTCTGCAACAAGGAGTTCCCATACAAATCTCTCGAACGCC
ATGAACAACACGAGTGCCAGGAGCGCCCGACCAAGTGCAAATACCATCGC
ATTGGCTGTCAGTGGCGGGGACCCTACCACGAGACCAACGAGCATGAGCG
CAACTGCTTGCATCCCCAGAAGTCTGGCTACGAGGTAATGGCAGCCCTGG
AGGCCCACGACGATAGGATCAAGGAGGAGAAGAAGATGTTTAACACCCTG
ATTGACTTGCTTAGCTACGAGAAGATCATATTCAATGACCTCCAAATGAA
ACCCT
MXO52614.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32486-PD | 1239 | CG32486-RD | 1..847 | 9..855 | 4210 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32486-RD | 2356 | CG32486-RD | 300..1147 | 8..855 | 4225 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3070163..3070540 | 385..8 | 1890 | 100 | Minus |
| 3L | 28110227 | 3L | 3057430..3057582 | 837..685 | 765 | 100 | Minus |
| 3L | 28110227 | 3L | 3057641..3057764 | 684..561 | 620 | 100 | Minus |
| 3L | 28110227 | 3L | 3057829..3057944 | 560..445 | 580 | 100 | Minus |
| 3L | 28110227 | 3L | 3058066..3058124 | 445..387 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:26:25 has no hits.
MXO52614.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:29 Download gff for
MXO52614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32486-PD | 1..847 | 9..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:37 Download gff for
MXO52614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32486-RD | 296..1147 | 1..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:08 Download gff for
MXO52614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32486-RD | 296..1147 | 1..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:08 Download gff for
MXO52614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3070162..3070544 | 1..386 | 98 | | Minus |
| 3L | 3057253..3057270 | 838..855 | 100 | <- | Minus |
| 3L | 3057430..3057582 | 685..837 | 100 | <- | Minus |
| 3L | 3057641..3057764 | 561..684 | 100 | <- | Minus |
| 3L | 3057829..3057943 | 446..560 | 100 | <- | Minus |
| 3L | 3058066..3058124 | 387..445 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:37 Download gff for
MXO52614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3057253..3057270 | 838..855 | 100 | <- | Minus |
| arm_3L | 3057430..3057582 | 685..837 | 100 | <- | Minus |
| arm_3L | 3057641..3057764 | 561..684 | 100 | <- | Minus |
| arm_3L | 3057829..3057943 | 446..560 | 100 | <- | Minus |
| arm_3L | 3058066..3058124 | 387..445 | 100 | <- | Minus |
| arm_3L | 3070162..3070544 | 1..386 | 98 | | Minus |
