MXO52616.5prime Sequence
918 bp (773 high quality bases) assembled on 2007-04-02
> MXO52616.5prime
CAGTCGACATGAGCCTGCAGTCGATCAAGTACTCGCGGGGCAGCCTGGAG
ATCCTCGACCAGCTGCTCCTGCCCGGTCAGTCAAAGTACGTGGTGGTGCG
AGGAGTGGAGGATGGCTGGAAGGTCATCAACAAGATGCAGGTGCGTGGTG
CTCCGGCCATCGCTATCGTTGGCTGCCTCTCCCTGGCCGTGGAAATCAAC
CCGGAGGATTTTGAGAACAAGAAATCACTGCGGCAGGAGATTGAGGGAAA
GTTGAACTATTTGGTTTCCGCCAGGCCTACGGCGGTCAACATGAAGATCG
CAGCCGACGAGCTCATCACCCTGGCCAACGAACTTTACAAGGACGAGGCA
ATCGACGTGACCCAAATGAAGCATAGATTTCTGGACGCGACCGAAGCTAT
GCTAAAAAAAGACATTGCCGATAACCGTGCCATTGGAGCGAATGGAGCCC
AGGCGATCCTACAGGGCGTGGCGAAGGCAGGTAAAGCGCCCGCTGGATCG
ACGGGATCCGTCCGGGTGCTTACCCACTGCAACACGGGTTCCCTGGCCAC
CGCCGGGTACGGTACAGCTCTGGGAGTGGTCCGCCAACTGGCCGAGCTGG
GAAAACTGGAGCACGTTTATTGCACAGAGACTCGTCCTTACAATCAGGGA
GCCCGCCTCACAGCCTACGAACTGGTCCACGAGAAATTCCCCGCCACTCT
GGTTCTGGATAGCATGGTGGCGGCTCTGCTGCGGGCCAAAAATGTGGCTG
CTGTGGTTGTAGGAGCAGATCGTGTGGCCTCCAATGGCGACACGGCCAAC
AAGATTGGTACCTACCAGATTGCCGTGGTTGCCAAGCACCACGACGTGCC
ATTTTACGTAGCCGCCCCTCTGACTTCCCTCGATCTAGCGATTCCCGGAG
GCGATCACATCATCTTTG
MXO52616.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11334-PA | 1095 | CG11334-RA | 1..906 | 9..914 | 4505 | 99.8 | Plus |
| CG11334-PB | 1095 | CG11334-RB | 1..906 | 9..914 | 4505 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11334-RC | 1380 | CG11334-RC | 96..1005 | 9..918 | 4520 | 99.8 | Plus |
| CG11334-RB | 1452 | CG11334-RB | 168..1077 | 9..918 | 4520 | 99.8 | Plus |
| CG11334-RA | 1516 | CG11334-RA | 232..1141 | 9..918 | 4520 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31460921..31461158 | 376..139 | 1190 | 100 | Minus |
| 3R | 32079331 | 3R | 31460630..31460864 | 609..375 | 1175 | 100 | Minus |
| 3R | 32079331 | 3R | 31460398..31460564 | 775..609 | 835 | 100 | Minus |
| 3R | 32079331 | 3R | 31460197..31460341 | 918..774 | 695 | 98.6 | Minus |
| 3R | 32079331 | 3R | 31461811..31461945 | 143..9 | 675 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:26:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3833..3877 | 324..280 | 117 | 73.3 | Minus |
MXO52616.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:30 Download gff for
MXO52616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11334-PB | 1..910 | 9..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:41 Download gff for
MXO52616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11334-RA | 224..1141 | 1..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:15 Download gff for
MXO52616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11334-RA | 224..1141 | 1..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:15 Download gff for
MXO52616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31461814..31461953 | 1..140 | 97 | | Minus |
| 3R | 31460197..31460341 | 774..918 | 98 | <- | Minus |
| 3R | 31460400..31460563 | 610..773 | 100 | <- | Minus |
| 3R | 31460630..31460862 | 377..609 | 100 | <- | Minus |
| 3R | 31460921..31461156 | 141..376 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:41 Download gff for
MXO52616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27285919..27286063 | 774..918 | 98 | <- | Minus |
| arm_3R | 27286122..27286285 | 610..773 | 100 | <- | Minus |
| arm_3R | 27286352..27286584 | 377..609 | 100 | <- | Minus |
| arm_3R | 27286643..27286878 | 141..376 | 100 | <- | Minus |
| arm_3R | 27287536..27287675 | 1..140 | 97 | | Minus |
