MXO52617.5prime Sequence
866 bp (773 high quality bases) assembled on 2007-04-02
> MXO52617.5prime
CAGTCGACATGAGCAGTCGCAAGCCCAGAGGCTCCGAAAACATGGAAAAT
TTGTGCCCGGTGACCAGAAAGCGCTCGACTAATAAGAACCACGTCTCTGT
TGTGGGCGCTCTAGTTTCCACTACGAAGTCATCGCACTACGAGCACCCTT
CCTCGCCCTCGGCACTAACTTTTGAGGCCCTAGAAGAGATGGGAATCGGA
ATGCTTGATTCCGAAGAAAGCAGCTCCTCAGCCCTCTCGGCCATCGCTTT
GGCGGTTAGCGCCACCAGCGACGACAACTCAAATGAGACGACCCCGTGCG
CCAGTGTGTCGCGCATGGCGCACCAGCTACAGCACACGCAACGGCTAAGT
CTGGGCTCTACGGGGGACATCACACTGGATAGCCCACCTGTGGAGGATTC
ACTGTCGATGTCCCGTCAATCGGCCGAGAAGCTGCAGATTCTGGCGCAGG
CTAAGCGCTCGTCGTTGGGTTCTGAAGGTAGCGGCAATTCAAACTCGCCC
AGCAAACGTTTGCGCAACCCCCTGGCTGCAGTCACCTGTAACAACCAGAT
TGATGGGACTGCTTCGCTCAATTTTCAGCCATCAACCAGCAGGTTGGCGC
AAGTTCGCCAGGCAAAAAAGCCCTCGACAACAAATATTACAACCCGAATA
GTGGCAGCGGACAGTTTCTTTGTGTTTCGCACCCCGGCCATGAGTGCCCA
CATCAACAGCGGCATAAACTACTTTGAAAGACTTTCAGACGAAATACTAC
TTGACATCTTTAAGTGGCTCCCGAAGAAGACGCTGCTGCGCATGGCTACC
GTTTGTCGACGCTTTAACCGCTGCTCTCGCGATGAGACTTTGTGGACAAN
GCTAGATTTGGGTTTG
MXO52617.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9772-PA | 1680 | CG9772-RA | 1..858 | 9..866 | 4221 | 99.6 | Plus |
| CG9772-PC | 948 | CG9772-RC | 1..858 | 9..866 | 4221 | 99.6 | Plus |
| CG9772-PB | 1746 | CG9772-RB | 120..924 | 62..866 | 3981 | 99.7 | Plus |
| CG9772-PD | 1500 | CG9772-RD | 1..678 | 189..866 | 3346 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skp2-RE | 1853 | CG9772-RE | 69..926 | 9..866 | 4249 | 99.7 | Plus |
| Skp2-RA | 2412 | CG9772-RA | 69..926 | 9..866 | 4249 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4336544..4337345 | 866..65 | 3984 | 99.8 | Minus |
| 3R | 32079331 | 3R | 4337548..4337606 | 67..9 | 280 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:10:18 has no hits.
MXO52617.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:30 Download gff for
MXO52617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9772-PC | 1..858 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:43 Download gff for
MXO52617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RA | 75..938 | 3..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:43 Download gff for
MXO52617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RA | 63..926 | 3..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:43 Download gff for
MXO52617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4336544..4337342 | 68..866 | 99 | <- | Minus |
| 3R | 4337548..4337612 | 3..67 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:43 Download gff for
MXO52617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 162266..163064 | 68..866 | 99 | <- | Minus |
| arm_3R | 163270..163334 | 3..67 | 93 | | Minus |
