MXO52620.5prime Sequence
845 bp (782 high quality bases) assembled on 2007-04-02
> MXO52620.5prime
CAGTCGACATGGCGCAAACGCAAGCTCCAGCCGCCAAGCGCATGAAGCTG
GAGAAGACGCCGGCAAATCCCGTCGAAGAGGATGAGACGCCCTCCGTGTT
CAATCCGAAGTACAGGGTGTGTCCCTACTTGGACACCATCAACCGTAACC
TGCTGGATTTCGATTTCGAGAAGCTTTGCTCCATTTCGCTGACGAGGATC
AATGTTTATGCCTGCCTGGTGTGCGGCAAGTACTTCCAGGGACGTGGCAC
CAACACCCACGCCTACACACATTCCGTGGGCGAGGCTCATCACGTGTTCC
TCAATCTGCACACGCTGCGATTCTACTGCCTGCCGGATAATTACGAGATC
ATCGACTCCTCGTTGGACGATATCAAATATGTGCTAAATCCAACGTTCAC
ACGCCAGGAGATCAGCAAGTTGGATCAGTTACAGCCGAAGCATTCGCGAA
CCGTGGACGGTGTTCTGTACTTACCCGGCGTCGTGGGTTTGAACAACATC
AAAGCGAACGACTACTGCAATGTGGTGCTGCATGCACTCTCCCACGTCGG
TCCACTTAGGGACTACTTCCTGCAAAAGCAAAGCTATGCGCATGTCGTGC
GGCCACCTGGAGATTCCGTGTTCACGCTGGTGCAACGTTTCGGCGAGCTA
ATGCGCAAGATGTGGAATCCGCGGAACTTTAAGTCGCACGTTTCGCCACA
CGAGATGCTGCAAGCTGTGGTGCTTTGGTCCAGCAAGCGTTTCCAGATCA
CCGAGCAAGGCGATCCCATTGACTTTCTGTCCTGGTTCCTCAATACACTG
CACCGCGCCCTCAAGGGCAACAAACATCCGAATTCTTCTATACTC
MXO52620.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7288-PA | 1485 | CG7288-RA | 1..837 | 9..845 | 4160 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7288-RA | 1695 | CG7288-RA | 93..929 | 9..845 | 4170 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18858488..18859249 | 84..845 | 3795 | 99.9 | Plus |
| X | 23542271 | X | 18858377..18858432 | 29..84 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:07:32 has no hits.
MXO52620.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:32 Download gff for
MXO52620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7288-PA | 1..837 | 9..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:59 Download gff for
MXO52620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7288-RA | 93..929 | 9..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:44 Download gff for
MXO52620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7288-RA | 93..929 | 9..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:44 Download gff for
MXO52620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18858295..18858316 | 9..30 | 100 | -> | Plus |
| X | 18858379..18858432 | 31..84 | 100 | -> | Plus |
| X | 18858489..18859249 | 85..845 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:59 Download gff for
MXO52620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18752328..18752349 | 9..30 | 100 | -> | Plus |
| arm_X | 18752412..18752465 | 31..84 | 100 | -> | Plus |
| arm_X | 18752522..18753282 | 85..845 | 99 | | Plus |
