MXO52624.5prime Sequence
940 bp (803 high quality bases) assembled on 2007-04-02
> MXO52624.5prime
CAGTCGACATGTGTGTGAATCGAGAAACGCAGAGCAGCAGCAACAATAAT
AGCAACAACACTACAACGGCAACGTCAACAGCACGCAACAACAACAGCCA
CAACGGACGCTGTGAGTGCGACGGAGACGGCGACAGCGTGAGTCATATAC
AAAGTGAAATGAAAATGCGGATAAAGCGAGAAGCGCCGTGTCTTCTGTTA
TTTATGCCAATCCAAAATACCAACAACAACAATCGCATTGGTGCCAATCA
GAAGGACTATCCCAACAAGCGGTCCAGGGAGAATCTGGCATGTGACGAAG
TGACATCGACGACGTCATCATCCACGGCAATGAACGGCGGCGGACGGACG
CCGGCGCTAACCCGCAGCTGCTCCAGTCCGGCGGTCTACGATATAGAAAC
ACACCCCGCCTCGCCCGTTTTCCCGCATCTATTGCTGGGCAATGGACGCG
ACGCCGACGATCCCAGCAGCGTGGGCGCCAACTGTGTGCTGAACGTTACC
TGCCAAAGTCCCAATGAGAGCCATCTGCAGGGCCTCAAGTACATGCAAAT
ACCTGCCAGCGATACGCCACATCAGAACATCAAGCAGTACTTCCAGGAGG
CCTACGACTTTATCGAAGATGCACGGAAAACGGGTTCCCGAGTGCTGCTG
CACTGCCACGCGGGGATTTCGCGGAGCGCCACCATTGCCATCGCCTACGT
CATGCGGTACAAGTCGCTCTCCCTGCTGGAGGCCTACAAGCTGGTGAAAG
TGGCCCGGCCGATCATCTCGCCCAATCTGAACTTCATGGGCCAGCTGCTG
GAGCTGGAGCAGAATTTGCGCAAGAGCGGAGTCCTGGCGCCCGCAACCCC
GCACCTGAATAGTCCTAGCAATCCTTCGTCATCTTCTGTGGGGATTAAGC
ACCCAATCTAGTCAACTGGGTGGAGCAGCCAGAAGGAGGA
MXO52624.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7850-PA | 1431 | puc-RA | 1..884 | 9..892 | 4395 | 99.8 | Plus |
| CG7850-PA | 1431 | puc-RA | 882..910 | 891..919 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| puc-RA | 2919 | CG7850-RA | 530..1458 | 9..940 | 4570 | 99.6 | Plus |
| puc-RB | 2407 | CG7850-RB | 252..946 | 243..940 | 3400 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8120511..8120827 | 615..933 | 1495 | 99.4 | Plus |
| 3R | 32079331 | 3R | 8105861..8106095 | 9..243 | 1175 | 100 | Plus |
| 3R | 32079331 | 3R | 8111076..8111301 | 390..615 | 1130 | 100 | Plus |
| 3R | 32079331 | 3R | 8108231..8108378 | 243..390 | 725 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:00:52 has no hits.
MXO52624.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:33 Download gff for
MXO52624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7850-PA | 1..928 | 9..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:41 Download gff for
MXO52624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| puc-RA | 523..1457 | 1..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:19 Download gff for
MXO52624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| puc-RA | 523..1457 | 1..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:19 Download gff for
MXO52624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8105854..8106095 | 1..243 | 98 | -> | Plus |
| 3R | 8108232..8108378 | 244..390 | 99 | -> | Plus |
| 3R | 8111077..8111301 | 391..615 | 100 | -> | Plus |
| 3R | 8120512..8120832 | 616..939 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:41 Download gff for
MXO52624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3931576..3931817 | 1..243 | 98 | -> | Plus |
| arm_3R | 3933954..3934100 | 244..390 | 99 | -> | Plus |
| arm_3R | 3936799..3937023 | 391..615 | 100 | -> | Plus |
| arm_3R | 3946234..3946554 | 616..939 | 99 | | Plus |
