MXO52625.5prime Sequence
853 bp (776 high quality bases) assembled on 2007-04-02
> MXO52625.5prime
CAGTCGACATGGACAAAAATCTGACGATGCCGAAGCGTTCGCGCATCGAT
GTCAAGGGCAACTTTGCCAACGGACCGCTGCAAGCACGCCCACTGGTGGC
CCTACTCGATGGACGCGACTGCTCCATCGAGATGCCCATCCTAAAGGATG
TGGCCACGGTGGCCTTTTGCGATGCACAAAGCACCTCCGAAATACACGAG
AAGGTCCTCAACGAGGCAGTGGGAGCTCTGATGTGGCACACCATCATCTT
GACAAAGGAGGATCTTGAGAAGTTCAAAGCTTTACGCATTATCGTGCGCA
TCGGCAGCGGCACAGACAACATTGATGTAAAGGCGGCGGGCGAACTGGGC
ATCGCCGTGTGCAACGTTCCCGGCTACGGAGTCGAGGAGGTGGCGGACAC
GACGATGTGCCTCATCCTCAACCTCTACCGGCGGACATACTGGCTAGCGA
ACATGGTGCGCGAGGGCAAGAAGTTCACCGGACCCGAGCAAGTGCGGGAG
GCTGCGCATGGCTGTGCACGCATCCGCGGCGACACCTTGGGTCTGGTGGG
ACTGGGCCGCATTGGTAGCGCCGTGGCCCTGCGGGCTAAGGCGTTCGGCT
TCAACGTCATCTTCTACGATCCCTACCTGCCCGATGGCATCGACAAGTCG
CTGGGCCTAACTCGCGTCTACACGCTGCAGGACCTGCTTTTCCAGTCCGA
TTGCGTCTCACTGCATTGCACGCTCAACGAGCACAACCATCATTTAATCA
ATGAATTCACAATTAAACAGATGCGACCTGGTGCATTTCTGGTGAACACC
GCACGCGGCGGTCTGGTCGATGACGAGACCCTGGCGTTGGCGCTGAAGCA
GGG
MXO52625.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7583-PC | 1161 | CtBP-RC | 1..845 | 9..853 | 4200 | 99.8 | Plus |
| CG7583-PD | 1161 | CtBP-RD | 1..845 | 9..853 | 4200 | 99.8 | Plus |
| CG7583-PE | 1431 | CtBP-RE | 1..845 | 9..853 | 4200 | 99.8 | Plus |
| CG7583-PB | 1161 | CtBP-RB | 1..845 | 9..853 | 4200 | 99.8 | Plus |
| CG7583-PA | 1161 | CtBP-RA | 1..845 | 9..853 | 4200 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CtBP-RJ | 2612 | CG7583-RJ | 375..1223 | 5..853 | 4215 | 99.8 | Plus |
| CtBP-RI | 2382 | CG7583-RI | 375..1223 | 5..853 | 4215 | 99.8 | Plus |
| CtBP-RH | 2627 | CG7583-RH | 375..1223 | 5..853 | 4215 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13019894..13020202 | 202..510 | 1545 | 100 | Plus |
| 3R | 32079331 | 3R | 13020849..13021114 | 505..770 | 1315 | 99.6 | Plus |
| 3R | 32079331 | 3R | 13019616..13019816 | 5..205 | 975 | 99 | Plus |
| 3R | 32079331 | 3R | 13021172..13021258 | 767..853 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:28:06 has no hits.
MXO52625.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:33 Download gff for
MXO52625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7583-PA | 1..845 | 9..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:51 Download gff for
MXO52625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CtBP-RH | 372..1223 | 1..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:17 Download gff for
MXO52625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CtBP-RH | 372..1223 | 1..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:17 Download gff for
MXO52625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13019613..13019814 | 1..203 | 98 | -> | Plus |
| 3R | 13019896..13020201 | 204..509 | 100 | -> | Plus |
| 3R | 13020854..13021114 | 510..770 | 100 | -> | Plus |
| 3R | 13021176..13021258 | 771..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:51 Download gff for
MXO52625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8845618..8845923 | 204..509 | 100 | -> | Plus |
| arm_3R | 8846576..8846836 | 510..770 | 100 | -> | Plus |
| arm_3R | 8845335..8845536 | 1..203 | 98 | -> | Plus |
| arm_3R | 8846898..8846980 | 771..853 | 100 | | Plus |
