MXO52626.5prime Sequence
806 bp (718 high quality bases) assembled on 2007-04-02
> MXO52626.5prime
CAGTCCACATGAGTCTACAGGACGCCATAAAGGCGACGGACGAGCTGTTT
GACCAGCTGAACAATTTGAGTAGCAGTGGCGCCAGGAATACCTGGTTCGC
GGAGCACCATAAGCCCGCAGTCTTCGAGCGGGATACAGCGCCATTTTTGG
AGATCTGCTACGCGGATCCAGACTTTGATGCGGATGGGGATGTGGCCAAC
AAGAGCGCCAAGACATGCGTAAGCGATCCCGTGGGTCGTGATCAGGAGGA
TGAGGACGACTATGATGAGGATGTCGATGGCGATGATCATAAACTGGGTT
GCGAGAAGGCTCCATTGGGCATCGGGCGCTCCAGCAAGGCGGTCTCTTAC
CAGGACATCCATTCGGCCTACATTTTTTGCCCCCCCCAGCACGTGACCAG
CAAGGTGGGCCAGTACATAGCGGAGATCCAGGCGCAGGACCAAAAGAGAC
GCAATGTGAAGTTCGCCGGATTCCAGCGAGTGAACTCTATGCCGGAGAGT
CTAACGCCCACATTGCAGCAGGTGTATGTCCATGATGGTGACTTCAAGGT
GGACAAAAACTGCCAGACTCACTCCAACTCCGATTCGAATTACAATTCCA
ATTCAAACAACTCTAGCAGCAGCTTTGATCGATTGCTGGCCGAGAACGAG
AGCCTGCAGCAAAAGATCAACTCATTGAGAGTAGAAGCGAAGCGTCTGCA
GGGCTTCTACGAGTATGTCCAGGAACGACTGGACAGAAAGACAGATGATT
TTGTGAAGATGAAGTGCAATTTCGAGACCCTGCGCACCGAGCTAAGCGAA
TGCCAG
MXO52626.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3429-PA | 1647 | swa-RA | 378..798 | 386..806 | 2080 | 99.7 | Plus |
| CG3429-PA | 1647 | swa-RA | 26..364 | 34..372 | 1670 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| swa-RA | 2022 | CG3429-RA | 113..910 | 9..806 | 3705 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6364618..6365145 | 806..279 | 2475 | 97.9 | Minus |
| X | 23542271 | X | 6365325..6365596 | 280..9 | 1240 | 97.1 | Minus |
| X | 23542271 | X | 6362345..6362662 | 806..489 | 1095 | 89.6 | Minus |
| X | 23542271 | X | 6363110..6363242 | 280..142 | 525 | 93.5 | Minus |
| X | 23542271 | X | 6362667..6362833 | 448..282 | 475 | 85.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:18 has no hits.
MXO52626.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:34 Download gff for
MXO52626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3429-PA | 1..798 | 9..806 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:05 Download gff for
MXO52626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swa-RA | 109..910 | 2..806 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:36 Download gff for
MXO52626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swa-RA | 109..910 | 2..806 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:36 Download gff for
MXO52626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6364618..6365144 | 280..806 | 97 | <- | Minus |
| X | 6365326..6365600 | 2..279 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:05 Download gff for
MXO52626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6258651..6259177 | 280..806 | 97 | <- | Minus |
| arm_X | 6259359..6259633 | 2..279 | 95 | | Minus |
