MXO52629.5prime Sequence
871 bp (801 high quality bases) assembled on 2007-04-02
> MXO52629.5prime
CCCCTAAAAGGAAGTTATCAGTCGACATGAGCGTTTCGATGCCCCTGGAA
CAGGGTGGTGCTGCCGGTGGTGCGCCACAGGGCGCCAGCGCAATCTTGGC
CGCAGCGGCTCCCTACTATCAACCGCCGGCTGTTCCCCAGGATGTTCAGC
CGGATCGTCCTATCGGCTATGGAGCATTCGGAGTTGTCTGGGCCGTCACA
GATCCTCGCGATGGACGACGAGTGGCATTGAAGAAGCTGCCAAATGTGTT
CCAATCGTTGGTCTCATCGAAGCGCGTTTTTCGCGAGCTGAAAATGCTGT
GCTTCTTCAAGCATGAAAATGTTCTTTCAGCTCTGGACATTCTACAGCCA
CCGCATTTGGATTTCTTTCAAGAAATCTATGTGATAACGGATCTGTTGCA
ATCGGATCTGCACAAGATAATCGTGTCGCCACAGCACCTGTCCGCCGACC
ACATCAAGGTGTTCCTGTACCAGATCCTGCGCGGCCTCAAATATCTGCAC
TCGGCCCGCATCCTGCATCGCGACATCAAGCCGGGCAATCTGCTGGTCAA
CTCGAATTGCGTGCTCAAGATCTGTGACTTTGGATTGGCCCGCGTCGAGG
AGCCGGATCAGGCCAAGCACATGACCCAAGAGGTGGTCACCCAGTACTAT
CGCGCACCGGAGATTCTGATGGGCGCTCGCCACTACTCGTCGGCGGTGGA
TGTATGGTCGGTGGGCTGCATTTTTGGCGAGCTGCTGGGCCGTCGCATCC
TCTTCCAGGCACAGAATCCTGTGCAGCAGCTGGAGCTGATTACCGAGCTG
CTTGGCACGCCCACCATGGAGGATATGCGTCACGCCCTGCGAGGGCGCCC
GCACCCACATGTTGCGCCGGG
MXO52629.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7892-PA | 1245 | nmo-RA | 1..810 | 27..836 | 3925 | 99.3 | Plus |
| CG7892-PB | 1245 | nmo-RB | 1..810 | 27..836 | 3925 | 99.3 | Plus |
| CG7892-PE | 1293 | nmo-RE | 1..810 | 27..836 | 3925 | 99.3 | Plus |
| CG7892-PC | 1245 | nmo-RC | 1..810 | 27..836 | 3925 | 99.3 | Plus |
| CG7892-PF | 1293 | nmo-RF | 1..810 | 27..836 | 3925 | 99.3 | Plus |
| CG7892-PG | 1293 | nmo-RG | 1..810 | 27..836 | 3925 | 99.3 | Plus |
| CG7892-PD | 603 | nmo-RD | 1..168 | 669..836 | 840 | 100 | Plus |
| CG7892-PA | 1245 | nmo-RA | 809..844 | 836..871 | 180 | 100 | Plus |
| CG7892-PB | 1245 | nmo-RB | 809..844 | 836..871 | 180 | 100 | Plus |
| CG7892-PE | 1293 | nmo-RE | 809..844 | 836..871 | 180 | 100 | Plus |
| CG7892-PC | 1245 | nmo-RC | 809..844 | 836..871 | 180 | 100 | Plus |
| CG7892-PF | 1293 | nmo-RF | 809..844 | 836..871 | 180 | 100 | Plus |
| CG7892-PG | 1293 | nmo-RG | 809..844 | 836..871 | 180 | 100 | Plus |
| CG7892-PD | 603 | nmo-RD | 167..202 | 836..871 | 180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nmo-RH | 6235 | CG7892-RH | 719..1562 | 27..871 | 4125 | 99.3 | Plus |
| nmo-RG | 2250 | CG7892-RG | 548..1391 | 27..871 | 4125 | 99.3 | Plus |
| nmo-RF | 2757 | CG7892-RF | 1055..1898 | 27..871 | 4125 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8046570..8047063 | 377..871 | 2395 | 99.4 | Plus |
| 3L | 28110227 | 3L | 7980819..7980983 | 27..191 | 780 | 98.2 | Plus |
| 3L | 28110227 | 3L | 8039874..8040006 | 190..322 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 8045891..8045950 | 321..380 | 285 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:26:49 has no hits.
MXO52629.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:34 Download gff for
MXO52629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7892-PC | 1..844 | 27..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:47 Download gff for
MXO52629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmo-RF | 1050..1898 | 19..871 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:20 Download gff for
MXO52629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmo-RF | 1050..1898 | 19..871 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:20 Download gff for
MXO52629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7980814..7980982 | 19..190 | 96 | -> | Plus |
| 3L | 8039875..8040004 | 191..320 | 100 | -> | Plus |
| 3L | 8045891..8045946 | 321..376 | 100 | -> | Plus |
| 3L | 8046570..8047063 | 377..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:47 Download gff for
MXO52629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7973914..7974082 | 19..190 | 96 | -> | Plus |
| arm_3L | 8032975..8033104 | 191..320 | 100 | -> | Plus |
| arm_3L | 8038991..8039046 | 321..376 | 100 | -> | Plus |
| arm_3L | 8039670..8040163 | 377..871 | 99 | | Plus |
