MXO52630.5prime Sequence
549 bp (549 high quality bases) assembled on 2007-04-02
> MXO52630.5prime
CAGTCGACATGTCATCCCGTAAGACCGCCGGACGTCGCGCCACCACCAAG
AAGCGCGCCCAACGCGCCACCTCCAATGTGTTCGCCATGTTCGATCAGGC
GCAGATTGCCGAGTTCAAGGAGGCATTCAACATGATCGACCAGAACCGTG
ATGGCTTCGTCGAGAAGGAGGATCTGCACGACATGCTGGCCTCGCTGGGC
AAGAACCCAACGGACGACTATCTCGATGGCATGATGAACGAGGCGCCCGG
GCCCATCAACTTCACCATGTTCCTCACGCTCTTCGGCGAGCGGCTGCAGG
GCACCGATCCCGAGGATGTGATCAAGAACGCCTTCGGCTGCTTCGACGAG
GAGAATATGGGCGTCCTGCCCGAGGATCGCCTGAGGGAGCTGCTGACCAC
CATGGGTGATCGGTTCACAGACGAGGATGTGGACGAGATGTATCGGGAGG
CGCCCATCAAAAACGGTCTGTTCGACTACCTCGAATTCACGCGCATCCTT
AAGCACGGTGCCAAGGACAAGGATGAGCAGAAAGCAAGCTTTCTAGACC
MXO52630.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3595-PA | 525 | sqh-RA | 1..522 | 9..530 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sqh-RE | 1024 | CG3595-RE | 153..679 | 8..534 | 2620 | 99.8 | Plus |
| sqh-RD | 1097 | CG3595-RD | 226..752 | 8..534 | 2620 | 99.8 | Plus |
| sqh-RC | 1403 | CG3595-RC | 532..1058 | 8..534 | 2620 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6223583..6224005 | 430..8 | 2115 | 100 | Minus |
| X | 23542271 | X | 6223406..6223511 | 534..429 | 515 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:39:48 has no hits.
MXO52630.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:35 Download gff for
MXO52630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3595-PA | 1..525 | 9..533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:45 Download gff for
MXO52630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqh-RB | 215..748 | 1..534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:16 Download gff for
MXO52630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqh-RC | 525..1058 | 1..534 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:16 Download gff for
MXO52630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6223406..6223511 | 429..534 | 99 | <- | Minus |
| X | 6223585..6224012 | 1..428 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:45 Download gff for
MXO52630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6117439..6117544 | 429..534 | 99 | <- | Minus |
| arm_X | 6117618..6118045 | 1..428 | 99 | | Minus |
