MXO52631.5prime Sequence
948 bp (842 high quality bases) assembled on 2007-04-02
> MXO52631.5prime
CAGTCGACATGTTAAAGTTTATCAGCGGAAAAGGGCAGCAGCCCAGTGCT
GACAGACACCGCCTACAGAAGGACCTTTTTGCTTATCGTAAGACGGCACA
GCATGGCTTTCCTCATAAGCCTTCGGCTCTTGCGTATGATCCAGTTTTGA
AACTTATGGCAATAGGGACGCAAACAGGGGCTTTAAAAGTTTTCGGTCAA
CCCGGAGTTGAATTGTACGGTCAGCATACTTTGTTAAACAATTCAGCATC
GGAGCTTAATGTACAATTACTTGAATGGGTGTATGGAACTGGTCGCATAC
TTTCGTTGACGGCAGCGAATCAATTAATTCTATGGGAGCCAGTTGGAGCA
ACGTTGCTGCCAATCAAAACACTACCGTTTGACGGCAAACTTAAAAAAGT
TTCATCGCTGTGCTGTTCTCTCAGTAAGGATCTGCTATGGATTGGAACAG
AAGGTGGAAACATCTATCAACTGGATTTACATACATTTACCATTAAGGAG
CCTGTAATTTACCATGACGTTGTGCTAGAGCAGGTGCCACCAGCCTACAA
GCTAAATCCTGGTGCAATTGAGTCAATCCGCCAACTTCCAAACTCCCCTA
GCAAACTTCTAGTTGCATACAATCGCGGCCTTTGTGTTTTGTGGGATTTT
GAAAGCGCATCTGTCCAGCGAGCATACATAGCCCCTGGACATGGACAGAG
CGTTGGTCTTACAGTGAACTTCGAAGGATCTGAATTTACCTGGTACCACG
CTGATGGTTCATACGCCACTTGGAGCATAGATAACCCAGAACCGCCGTCG
AATGTTAATTATGTGCCTTATGGACCTGATCCATGCAAAAGCATAAATCG
ACTGTACAAAGGCAAGCGAAGATCCCACGATGTAATTGTTTTTTCCGGCG
GCATGCCACGGTCAGCATATGGTGATCACAATTGTGTGTCCGTTCACG
MXO52631.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2671-PC | 3486 | l(2)gl-RC | 1..940 | 9..948 | 4650 | 99.7 | Plus |
CG2671-PA | 3486 | l(2)gl-RA | 1..940 | 9..948 | 4650 | 99.7 | Plus |
CG2671-PB | 3462 | l(2)gl-RB | 61..916 | 93..948 | 4255 | 99.8 | Plus |
CG2671-PD | 3339 | l(2)gl-RD | 1..793 | 156..948 | 3940 | 99.8 | Plus |
CG2671-PE | 3339 | l(2)gl-RE | 1..793 | 156..948 | 3940 | 99.8 | Plus |
CG2671-PF | 3339 | l(2)gl-RF | 1..793 | 156..948 | 3940 | 99.8 | Plus |
CG2671-PB | 3462 | l(2)gl-RB | 1..50 | 9..58 | 225 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)gl-RK | 5281 | CG2671-RK | 529..1468 | 9..948 | 4670 | 99.8 | Plus |
l(2)gl-RJ | 5528 | CG2671-RJ | 667..1606 | 9..948 | 4670 | 99.8 | Plus |
l(2)gl-RI | 5390 | CG2671-RI | 529..1468 | 9..948 | 4670 | 99.8 | Plus |
l(2)gl-RK | 5281 | CG2671-RK | 387..441 | 8..62 | 245 | 96.4 | Plus |
l(2)gl-RJ | 5528 | CG2671-RJ | 525..579 | 8..62 | 245 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14933..15713 | 871..91 | 3905 | 100 | Minus |
2L | 23513712 | 2L | 17053..17136 | 92..9 | 405 | 98.8 | Minus |
2L | 23513712 | 2L | 14798..14876 | 948..870 | 380 | 98.7 | Minus |
2L | 23513712 | 2L | 19891..19945 | 62..8 | 245 | 96.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:17:48 has no hits.
MXO52631.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:35 Download gff for
MXO52631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2671-PA | 1..940 | 9..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:20 Download gff for
MXO52631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)gl-RI | 529..1468 | 9..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:08 Download gff for
MXO52631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)gl-RI | 529..1468 | 9..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:08 Download gff for
MXO52631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14798..14874 | 872..948 | 98 | <- | Minus |
2L | 14933..15711 | 93..871 | 100 | <- | Minus |
2L | 17053..17136 | 9..92 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:20 Download gff for
MXO52631.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14798..14874 | 872..948 | 98 | <- | Minus |
arm_2L | 14933..15711 | 93..871 | 100 | <- | Minus |
arm_2L | 17053..17136 | 9..92 | 98 | | Minus |