Clone MXO52631 Report

Search the DGRC for MXO52631

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:526
Well:31
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptl(2)gl-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO52631.5prime Sequence

948 bp (842 high quality bases) assembled on 2007-04-02

> MXO52631.5prime
CAGTCGACATGTTAAAGTTTATCAGCGGAAAAGGGCAGCAGCCCAGTGCT
GACAGACACCGCCTACAGAAGGACCTTTTTGCTTATCGTAAGACGGCACA
GCATGGCTTTCCTCATAAGCCTTCGGCTCTTGCGTATGATCCAGTTTTGA
AACTTATGGCAATAGGGACGCAAACAGGGGCTTTAAAAGTTTTCGGTCAA
CCCGGAGTTGAATTGTACGGTCAGCATACTTTGTTAAACAATTCAGCATC
GGAGCTTAATGTACAATTACTTGAATGGGTGTATGGAACTGGTCGCATAC
TTTCGTTGACGGCAGCGAATCAATTAATTCTATGGGAGCCAGTTGGAGCA
ACGTTGCTGCCAATCAAAACACTACCGTTTGACGGCAAACTTAAAAAAGT
TTCATCGCTGTGCTGTTCTCTCAGTAAGGATCTGCTATGGATTGGAACAG
AAGGTGGAAACATCTATCAACTGGATTTACATACATTTACCATTAAGGAG
CCTGTAATTTACCATGACGTTGTGCTAGAGCAGGTGCCACCAGCCTACAA
GCTAAATCCTGGTGCAATTGAGTCAATCCGCCAACTTCCAAACTCCCCTA
GCAAACTTCTAGTTGCATACAATCGCGGCCTTTGTGTTTTGTGGGATTTT
GAAAGCGCATCTGTCCAGCGAGCATACATAGCCCCTGGACATGGACAGAG
CGTTGGTCTTACAGTGAACTTCGAAGGATCTGAATTTACCTGGTACCACG
CTGATGGTTCATACGCCACTTGGAGCATAGATAACCCAGAACCGCCGTCG
AATGTTAATTATGTGCCTTATGGACCTGATCCATGCAAAAGCATAAATCG
ACTGTACAAAGGCAAGCGAAGATCCCACGATGTAATTGTTTTTTCCGGCG
GCATGCCACGGTCAGCATATGGTGATCACAATTGTGTGTCCGTTCACG

MXO52631.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG2671-PC 3486 l(2)gl-RC 1..940 9..948 4650 99.7 Plus
CG2671-PA 3486 l(2)gl-RA 1..940 9..948 4650 99.7 Plus
CG2671-PB 3462 l(2)gl-RB 61..916 93..948 4255 99.8 Plus
CG2671-PD 3339 l(2)gl-RD 1..793 156..948 3940 99.8 Plus
CG2671-PE 3339 l(2)gl-RE 1..793 156..948 3940 99.8 Plus
CG2671-PF 3339 l(2)gl-RF 1..793 156..948 3940 99.8 Plus
CG2671-PB 3462 l(2)gl-RB 1..50 9..58 225 98 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)gl-RK 5281 CG2671-RK 529..1468 9..948 4670 99.8 Plus
l(2)gl-RJ 5528 CG2671-RJ 667..1606 9..948 4670 99.8 Plus
l(2)gl-RI 5390 CG2671-RI 529..1468 9..948 4670 99.8 Plus
l(2)gl-RK 5281 CG2671-RK 387..441 8..62 245 96.4 Plus
l(2)gl-RJ 5528 CG2671-RJ 525..579 8..62 245 96.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14933..15713 871..91 3905 100 Minus
2L 23513712 2L 17053..17136 92..9 405 98.8 Minus
2L 23513712 2L 14798..14876 948..870 380 98.7 Minus
2L 23513712 2L 19891..19945 62..8 245 96.4 Minus
Blast to na_te.dros performed on 2014-11-28 23:17:48 has no hits.

MXO52631.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:35 Download gff for MXO52631.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2671-PA 1..940 9..948 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:20 Download gff for MXO52631.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)gl-RI 529..1468 9..948 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:08 Download gff for MXO52631.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)gl-RI 529..1468 9..948 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:08 Download gff for MXO52631.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14798..14874 872..948 98 <- Minus
2L 14933..15711 93..871 100 <- Minus
2L 17053..17136 9..92 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:20 Download gff for MXO52631.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14798..14874 872..948 98 <- Minus
arm_2L 14933..15711 93..871 100 <- Minus
arm_2L 17053..17136 9..92 98   Minus