MXO52632.5prime Sequence
806 bp (749 high quality bases) assembled on 2007-04-02
> MXO52632.5prime
CAGTCGACATGGGAATCTTTGGGCCCTCGTCGCCATTCGACGCCGACGTG
GAAAAGGCCACCAGCGAAACTAATACCAACGACAACTGGTCTCTGATTTT
GGATGTATGCGACAAGGTAACGACCAATCCCCGCCTGGCCAAGGATTGCC
TGAAGGCGGTGATGCGCCGCATGGGCCACACCGATCCTCATGTGGTGATG
CAGGCGATTACGCTTTTGGACGCCCTGTCCAACAACTGCGGAAAACCGCT
CCATTTGGAGGTGGCTTCACGGGATTTCGAGACGGAGTTCCGCCGCCTGT
TGGCCAAAGCACAGCCAAAGGTTTCACTGAAAATGCGCCAAGTGCTGAAG
AACTGGGCTGAAAACGACTATAAGAACGATCGAGAGCTCGACTTGATACC
CGCACTCTATGCCAAGCTGCGCCAAGAGGGATATGATTTCAAGAATCTTG
GCGATAAGACTAGCAAGACTGTTGCCGAAAAGGCCGCCGCCCTGCCCAAA
GATCCGAATGTGGTCAGCAGCCAGCAGGAAGAGGATGACATCGCCAAGGC
CATCGAATTGTCGCTGAAGGAGAACAAGGGCAGTCCAAAGACTGGGAGTG
TAGCAAGTACCGGCACCGCCAGTGCCTATCCCTCATTGTATCCATCTTTC
GCTGGAACCGGCTCGAGTGCACCGAGCGCCGAAGCCAGTTCCGCACCAGC
GCCAGAGCCGAGAAAGGTTCGAGCTCTGTACGATTTCGAAGCTGCCGAGG
AAAACGAATTGACCTTCTTTGCCGGCGAGATCATTCATGTGCTGGATGAT
AGTGAT
MXO52632.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6521-PA | 2070 | Stam-RA | 1..798 | 9..806 | 3940 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stam-RA | 2854 | CG6521-RA | 300..1097 | 9..806 | 3960 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10859700..10860183 | 323..806 | 2405 | 99.8 | Plus |
| 2L | 23513712 | 2L | 10859369..10859647 | 51..329 | 1395 | 100 | Plus |
| 2L | 23513712 | 2L | 10858835..10858877 | 9..51 | 185 | 95.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:38:38 has no hits.
MXO52632.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:35 Download gff for
MXO52632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6521-PA | 1..798 | 9..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:22 Download gff for
MXO52632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stam-RA | 293..1097 | 1..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:29 Download gff for
MXO52632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stam-RA | 293..1097 | 1..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:29 Download gff for
MXO52632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10859370..10859647 | 52..329 | 100 | -> | Plus |
| 2L | 10859707..10860183 | 330..806 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:22 Download gff for
MXO52632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10859370..10859647 | 52..329 | 100 | -> | Plus |
| arm_2L | 10859707..10860183 | 330..806 | 100 | | Plus |
