MXO52633.5prime Sequence
600 bp (600 high quality bases) assembled on 2007-04-02
> MXO52633.5prime
CAGTCGACATGCAAACCATCAAGTGCGTGGTCGTCGGCGACGGAGCCGTG
GGTAAGACATGCCTGCTCATCTCGTATACAACCAACAAGTTCCCGTCGGA
GTACGTGCCCACGGTGTTCGACAACTATGCGGTCACTGTGATGATCGGCG
GTGAGCCCTACACACTGGGCCTGTTCGATACGGCCGGACAGGAGGACTAC
GATCGGCTGCGTCCGCTCTCCTATCCGCAGACGGATGTCTTCCTTGTCTG
CTTTTCGGTGGTCAGTCCCAGTTCCTTCGAGAACGTCAAGGAGAAGTGGG
TGCCCGAGATTACACACCATTGCCAAAAGACGCCGTTCCTGCTGGTGGGC
ACACAGATTGATTTGCGCGACGAGAACAGCACGCTGGAGAAGCTGGCCAA
GAACAAGCAGAAGCCCATCACCATGGAGCAGGGCGAGAAGCTGGCCAAGG
AGCTGAAGGCCGTCAAGTACGTGGAGTGCTCGGCCTTGACACAGAAGGGC
CTGAAAAATGTATTCGACGAGGCCATCCTGGCCGCCCTCGAGCCACCAGA
GCCCACAAAGAAAAGGAAGTGCAAATTCTTAAAAGCAAGCTTTCTAGACC
MXO52633.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12530-PA | 576 | Cdc42-RA | 1..573 | 9..581 | 2865 | 100 | Plus |
| CG12530-PB | 576 | Cdc42-RB | 1..573 | 9..581 | 2865 | 100 | Plus |
| CG8556-PA | 579 | Rac2-RA | 169..233 | 177..241 | 175 | 90.7 | Plus |
| CG2248-PA | 579 | Rac1-RA | 10..59 | 18..67 | 150 | 92 | Plus |
| CG2248-PA | 579 | Rac1-RA | 464..520 | 472..528 | 135 | 89.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc42-RD | 2005 | CG12530-RD | 84..658 | 7..581 | 2875 | 100 | Plus |
| Cdc42-RC | 2078 | CG12530-RC | 157..731 | 7..581 | 2875 | 100 | Plus |
| Cdc42-RA | 1392 | CG12530-RA | 157..731 | 7..581 | 2875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19697956..19698245 | 7..296 | 1450 | 100 | Plus |
| X | 23542271 | X | 19698305..19698591 | 295..581 | 1435 | 100 | Plus |
| 3L | 28110227 | 3L | 1301827..1302347 | 528..8 | 610 | 74.5 | Minus |
| 3L | 28110227 | 3L | 7434278..7434511 | 241..8 | 465 | 79.9 | Minus |
| 3R | 32079331 | 3R | 27638122..27638245 | 165..288 | 200 | 77.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:40:01 has no hits.
MXO52633.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:36 Download gff for
MXO52633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12530-PB | 1..576 | 9..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:55 Download gff for
MXO52633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc42-RC | 153..734 | 1..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:22 Download gff for
MXO52633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc42-RA | 153..734 | 1..584 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:22 Download gff for
MXO52633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19697952..19698245 | 1..296 | 98 | -> | Plus |
| X | 19698307..19698590 | 297..580 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:55 Download gff for
MXO52633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19591985..19592278 | 1..296 | 98 | -> | Plus |
| arm_X | 19592340..19592623 | 297..580 | 100 | -> | Plus |
