MXO52634.5prime Sequence
924 bp (827 high quality bases) assembled on 2007-04-02
> MXO52634.5prime
CAGTCGACATGCAGGTCTGCGAGGAGGCACTCAAGGTCTTGAGGCAATCC
CGTCGTCGTCCTGTCCGCGGATTACTTCATGTCAGCGGAGACGGCCTGCG
AGTGGTGGACGACGAGACCAAGGGCCTGATAGTGGACCAGACCATCGAGA
AGGTCAGCTTCTGTGCACCGGATCGCAATCACGAACGCGGCTTCAGCTAC
ATATGCCGGGATGGAACCACTCGTCGCTGGATGTGTCACGGCTTCCTGGC
GTGCAAGGACTCCGGCGAGCGATTGTCCCATGCCGTTGGCTGTGCTTTTG
CCGTTTGTCTGGAGCGAAAGCAGCGACGCGACAAGGAGTGCGGCGTGACA
ATGACCTTCGACACGAAGAACTCGACCTTCACGCGGACCGGATCCTTCCG
TCAGCAGACGTTGACGGAGCGTCTGGCAATGGCCACAGTGGGCACAAATG
AGCGGAGCGTAGATGGGCCGGGATCAGCAATGCCGGGTCCTCCGGCGGCC
ACCGTCAAGCCTTTCAATCCCTTCGCCATCGAACGGCCCCATGCCACGCC
CAACATGCTGGAGCGTCAGAGTTCGTTCCGTTTGAGCACGATTGGCAGTC
AGTCGCCGTTCAAGCGCCAGATGTCACTGCGCATCAACGATCTTCCGTCC
AATGCCGATCGTCAGAGGGCCTTCCTGACCGCCGCCGCTGGCAATCCAAT
GCAGACGCCACTGCGAAGTGTTTCTCCCATTGCCGAGGTCTCGCCGGCCA
AGTCTGCTGGAGCGGATCCGTTGTCAGCTGCCGCTGTAGCCGCCGATTCT
GTGAGCCAACTGTGTCAGGAGCTCAGCCAGGGTCTCTCGCTCTTGACCCA
GACAGACGCCCTATTAGCCCGCGGCGAGGATCTAAACTTCACAACAATCG
CAGCATTAATCAGAACATCTTTGC
MXO52634.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3779-PA | 1671 | numb-RA | 294..1177 | 8..891 | 4370 | 99.7 | Plus |
| CG3779-PB | 1548 | numb-RB | 171..1054 | 8..891 | 4370 | 99.7 | Plus |
| CG3779-PA | 1671 | numb-RA | 1178..1206 | 891..919 | 145 | 100 | Plus |
| CG3779-PB | 1548 | numb-RB | 1055..1083 | 891..919 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| numb-RD | 4395 | CG3779-RD | 1112..2029 | 8..924 | 4520 | 99.6 | Plus |
| numb-RB | 2956 | CG3779-RB | 734..1651 | 8..924 | 4520 | 99.6 | Plus |
| numb-RA | 3309 | CG3779-RA | 1087..2004 | 8..924 | 4520 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9460937..9461818 | 44..924 | 4315 | 99.5 | Plus |
| 2L | 23513712 | 2L | 9460717..9460753 | 8..44 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:26:59 has no hits.
MXO52634.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:36 Download gff for
MXO52634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3779-PB | 166..1088 | 1..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:54 Download gff for
MXO52634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| numb-RA | 1082..2004 | 1..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:26 Download gff for
MXO52634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| numb-RA | 1082..2004 | 1..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:26 Download gff for
MXO52634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9460712..9460753 | 1..44 | 93 | -> | Plus |
| 2L | 9460938..9461818 | 45..924 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:54 Download gff for
MXO52634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9460712..9460753 | 1..44 | 93 | -> | Plus |
| arm_2L | 9460938..9461818 | 45..924 | 99 | | Plus |
