MXO52635.5prime Sequence
858 bp (781 high quality bases) assembled on 2007-04-02
> MXO52635.5prime
CAGTCGACATGAAGGTCTGCTGCCCTGGCGCTGGTTATGTCGGCGGTCCG
ACCTGCGCGGTTATGGCGCTCAAATGCCCCGATATCGTGATAACTCTGGT
GGACAAGAGCTCCGAGCGGATTGCCCAGTGGAATTCGGATAAGTTGCCCA
TTTACGAGCCCGGCTTGGATGAGGTGGTGAAGAAGTGCCGCAATGTGAAC
CTCTTCTTCTCAACGGACATCGAGACGGCCATCAAGGAGGCGGACCTCAT
CTTCATCTCGGTGAACACGCCCACAAAAACCTGCGGCAATGGCAAGGGCC
GAGCGGCGGACCTCAAGTACGTGGAGAGCGCAGCGCGGATGATCGCCGAG
ATCGCGCAGTCCAACAAGATTGTGGTGGAGAAGAGCACGGTGCCCGTGCG
GGCGGCGGAGAGCATCATGCACATACTGCGAGCGAACCAGAAGCCGGGCA
TCCACTACGACATACTGTCCAATCCCGAGTTCCTCGCCGAGGGCACCGCC
ATCAATGACCTGCTAAATGCGGATCGTGTGCTGATCGGCGGCGAGGAGAC
GCCCGAGGGCCACCAGGCGGTGGAGAAGCTGTCGTGGATCTACGAGCACT
GGATACCCAAGCAGAACATACTCACGACGAACACGTGGAGCAGCGAGCTG
TCTAAGCTGGCGGCCAACGCATTCCTCGCCCAGCGAATCTCCAGCATCAA
TTCGCTGTCGGCAGTGTGCGAGGCCACGGGCGCAGATGTTTCCGAGGTGG
CGAGGGCCGTGGGTCTAGACTCTCGCATCGGTTCCAAGTTCCTGCAGGCG
TCGGTGGGCTTCGGCGGCAGTTGCTTTCAGAAGGACATCCCTCATCTGAT
TTACATCT
MXO52635.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10072-PA | 1431 | sgl-RA | 1..832 | 9..840 | 4110 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgl-RA | 2275 | CG10072-RA | 209..1062 | 5..858 | 4180 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6960767..6961328 | 858..297 | 2765 | 99.5 | Minus |
| 3L | 28110227 | 3L | 6964397..6964550 | 158..5 | 725 | 98.1 | Minus |
| 3L | 28110227 | 3L | 6961810..6961951 | 298..157 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:07:18 has no hits.
MXO52635.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:36 Download gff for
MXO52635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10072-PA | 1..850 | 9..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:15 Download gff for
MXO52635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgl-RA | 206..1062 | 1..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:23 Download gff for
MXO52635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgl-RA | 206..1062 | 1..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:23 Download gff for
MXO52635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6960767..6961327 | 298..858 | 99 | <- | Minus |
| 3L | 6961811..6961949 | 159..297 | 100 | <- | Minus |
| 3L | 6964397..6964553 | 1..158 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:15 Download gff for
MXO52635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6953867..6954427 | 298..858 | 99 | <- | Minus |
| arm_3L | 6954911..6955049 | 159..297 | 100 | <- | Minus |
| arm_3L | 6957497..6957653 | 1..158 | 96 | | Minus |
