Clone MXO52637 Report

Search the DGRC for MXO52637

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:526
Well:37
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptTom-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO52637.5prime Sequence

498 bp (498 high quality bases) assembled on 2007-04-02

> MXO52637.5prime
CAGTCGACATGTCGTTCATCACACGGGAATACAAGTTTGAGAGCAGCAAG
GTGATGGAGCCGAAATCAGATCAGCACACGATGGCCATGCGGAGTCTGAG
GAAACTGGTCAAACCCCTTCTGCGACTGGTGAAGAAGAAGCAGCTACTCC
GGAAGACTCTGGCCGAGATCCAGAACCAAAATGCAGTCAACGCCTCGCTG
GAGGACATGCGCAAAGATCCGGCGGCCAGTTGCGATAACATGGCCAACGA
GGAGCTGGAGCAGCGACTGTACACCGATCTCCGCCAGTGCCCCACCAACG
TGGCCATGATCGTGCAGCAGGGTCAGCAACAGAGCATCGTGCCCGTCCAT
CCGGAGCAGACCTTCATCCCGGTCCACTTCGCCCGCACCACCAGCGGCAC
CTTCTTCTGGACCTCAGCCGAGGGAGCTCGCCAGCACCACGAACAGCAGT
TGCGCCAGCAGTTCGACCGTTGGGTTCAGGCCGCAAGCTTTCTAGACC

MXO52637.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5185-PA 477 Tom-RA 1..474 9..482 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
Tom-RA 963 CG5185-RA 84..557 9..482 2370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14969427..14969900 9..482 2370 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:28:17 has no hits.

MXO52637.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:37 Download gff for MXO52637.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5185-PA 1..477 9..486 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:55 Download gff for MXO52637.5prime
Subject Subject Range Query Range Percent Splice Strand
Tom-RA 77..560 1..486 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:26 Download gff for MXO52637.5prime
Subject Subject Range Query Range Percent Splice Strand
Tom-RA 77..560 1..486 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:26 Download gff for MXO52637.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14969420..14969903 1..486 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:55 Download gff for MXO52637.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14962520..14963003 1..486 98   Plus