MXO52639.5prime Sequence
883 bp (817 high quality bases) assembled on 2007-04-02
> MXO52639.5prime
CAGTCGACATGGAGAACTTAACGCACAATGTAAACGAAACCAAGGTGGAT
TTGGGCCAGGAGAAGGAGAAGGAGGCGTCGCAGGAGGAGGAGCATGCCAC
CGCCGCCAAGGAGACCATCATTGACATTCCCGCCGCGTGCTCCAGTTCCT
CCAACTCCTCGTCGTACGACACCGATTGCAGCACGGCGAGCAGCACCTGC
TGCACCCGCCAAGGCGAGCACATCTACATGCAACGCGAGGCCATCCCGGC
CACGCCACTTCCGGAGTCGGAGGATATCGGCCTGCTGAAGTACGTCCACC
GCCAGCACTGGCCCTGGTTCATCCTAGTGATCTCCATCATTGAGATTGCC
ATCTTCGCCTACGACCGCTACACAATGCCCGCCCAGAATTTCGGGCTACC
CGTTCCGATTCCGTCGGATTCGGTGCTGGTCTATCGGCCGGACCGGCGTC
TGCAGGTGTGGCGCTTCTTTAGCTACATGTTCCTGCACGCCAACTGGTTC
CACCTGGGCTTCAATATCGTCATCCAGCTGTTTTTTGGCATTCCCCTGGA
GGTGATGCACGGCACGGCCAGGATCGGCGTGATCTACATGGCGGGCGTTT
TTGCCGGATCCCTGGGCACCAGTGTCGTCGACTCGGAGGTCTTCCTGGTG
GGCGCCAGCGGTGGCGTCTATGCCCTGTTGGCCGCACATCTGGCCAACAT
TACACTGAACTATGCGCACATGAAGAGCGCATCCACGCAACTCGGATCCG
TTGTCATCTTTGTCTCCTGCGATCTGGGCTATGCTCTCTACACCCAATAC
TTCGATGGAAGCGCCTTCGCCAAGGGTCCCCAGGTGTCGTACATTGCCCA
CCTGACGGGAGCCCTGGCAGGACTAACGATCGG
MXO52639.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1004-PA | 1068 | rho-RA | 1..875 | 9..883 | 4350 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-RB | 3000 | CG1004-RB | 341..1216 | 8..883 | 4365 | 99.9 | Plus |
| rho-RA | 2531 | CG1004-RA | 341..1216 | 8..883 | 4365 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1466488..1466907 | 343..762 | 2100 | 100 | Plus |
| 3L | 28110227 | 3L | 1465486..1465822 | 8..344 | 1670 | 99.7 | Plus |
| 3L | 28110227 | 3L | 1467039..1467160 | 762..883 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:17:53 has no hits.
MXO52639.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:38 Download gff for
MXO52639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1004-PA | 1..875 | 9..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:24 Download gff for
MXO52639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-RA | 335..1216 | 1..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:11 Download gff for
MXO52639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-RA | 335..1216 | 1..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:11 Download gff for
MXO52639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1465480..1465822 | 1..344 | 98 | -> | Plus |
| 3L | 1466490..1466907 | 345..762 | 100 | -> | Plus |
| 3L | 1467040..1467160 | 763..883 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:24 Download gff for
MXO52639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1467040..1467160 | 763..883 | 100 | | Plus |
| arm_3L | 1465480..1465822 | 1..344 | 98 | -> | Plus |
| arm_3L | 1466490..1466907 | 345..762 | 100 | -> | Plus |
