MXO52640.5prime Sequence
908 bp (774 high quality bases) assembled on 2007-04-02
> MXO52640.5prime
CAGTCGACATGAAAATAGCTGTCGACGGATGTGCACATGGCGAGCTGGAA
CGAATATACGACACCATAGAGGGCATCGAAAAGGTTGGCGGCACCAAGAT
CGACTTGTTATTGTGCTGTGGCGATTTTCAGTCCACCCGGAATCTGGAGG
ATTTGCAGACGATGGCTGTACCAAAGAAGTACCTGGATATGTGCTCCTTT
TACAAATACTACAGTGGCGAGCTGGTAGCACCAGTGCTGACCATATTCAT
TGGCGGCAACCATGAGGCCTCCAATTACCTGCAGGAGCTCCCATACGGCG
GTTGGGTGGCTCCAAATATTTACTACCTTGGTTATGCCGGCGTCGTCAAT
GTAAACGGTGTTCGGATAGCTGGAATAAGCGGAATCTTCAAGGGTCACGA
CTTTTTGCGCGGCCATCACGAATTCCCTCCGTATACCGATTCCACGTGTC
GCAGTGTCTACCATGTGCGGCAGCTAGAAGTCTTTCGGCTGAAACAAATT
TCCGGGCGAGTTGATATTTTCCTGTCCCACGACTGGCCCACCGGCATCTA
TGAATACGGAAACAAGGCGCAACTGCTCCGCAAGAAACCATTTTTTGCTG
CAGACATGGAAAGCGGGAAGCTGGGTAGCCAGCCACTGGAGGAGTTACTG
AAAGCGGTCCAACCGGCCTACTGGTTTGCTGCCCATTTGCATTGCAAGTT
TGCCGCTTTGGTGCCGCACAATCACAGCCAGAAGCTAGGAGATGCTGAAT
CTTCCTCTTCCAGCAGCAGCAGTGAAGATGAAGACGAGGAAAGGGAGAAG
GTAAAGAAAGCTGCTCCTGTACCTCCACCATCCAAATCTGTTCCCGTGAC
CAAGTTTCTGGCTCTCGACAAATGCCTGCCACGTCGTGCTTTCCTGCAAG
TGGTAGAG
MXO52640.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7942-PA | 1605 | CG7942-RA | 1..900 | 9..908 | 4475 | 99.8 | Plus |
| CG7942-PB | 1605 | CG7942-RB | 1..900 | 9..908 | 4475 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ldbr-RB | 1734 | CG7942-RB | 92..992 | 8..908 | 4490 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8122163..8122873 | 198..908 | 3525 | 99.7 | Plus |
| 3L | 28110227 | 3L | 8121918..8122115 | 8..205 | 975 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:06:08 has no hits.
MXO52640.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:38 Download gff for
MXO52640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7942-PB | 1..900 | 9..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:05 Download gff for
MXO52640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 92..992 | 8..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:45 Download gff for
MXO52640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ldbr-RB | 92..992 | 8..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:45 Download gff for
MXO52640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8121918..8122115 | 8..205 | 99 | -> | Plus |
| 3L | 8122171..8122873 | 206..908 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:05 Download gff for
MXO52640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8115018..8115215 | 8..205 | 99 | -> | Plus |
| arm_3L | 8115271..8115973 | 206..908 | 100 | | Plus |
