MXO52641.5prime Sequence
875 bp (808 high quality bases) assembled on 2007-04-02
> MXO52641.5prime
CAGTCGACATGTCATCCGCCGCGAAGAAACGGGAGGCGCAGAAGAAGAAG
GATGCGCGCAACAAGAAGATCCAACAGATACCCTCCACCAAGAAGGCCAA
TGGTGTCCCGGAACGCGAACTGACCGAGGAGGAGAAGCTGTGCGCCAAGC
TGGAGGAGGAGGCCCGGATCAGTGCGGAGGCCCGATCCTGCACCGGATCG
CTGGCGGTGCATCCGCGTTCCCGTGACGTCAAGATCGCCAACTTTTCGAT
CACGTTCTTTGGCTCCGAGCTGCTGCAGGACACCATGCTGGAGTTGAATT
GCGGGCGTCGCTACGGTCTGATTGGCCTGAACGGATGCGGTAAGTCCTCG
CTGCTGGCCGTGCTTGGCGGCAGGGAGGTGCCGGTACCGCCGCACATCGA
CATCTTCCACTTGACGCGCGAAATCCCGGCCAGTTCAAAGAGTGCGCTGC
AGTGCGTCATGGAGGTGGATGAGGAGCGCATTAAGCTAGAGAAGCTGGCC
GAAGAGCTGGCCATGAGCGAGGAAGATGATGCTCAGGAGCAGCTGATCGA
CATCTACGAGCGGCTGGACGATATGTCCGCCGATCTGGCAGAGGTCAAGG
CGGCCCGCATCCTTCACGGTCTTGGCTTCGACAAGGCCATGCAACAGAAA
CAGGCCAAGGACTTCTCAGGTGGTTGGCGTATGCGTATCGCCTTGGCCCG
CGCGCTGTTTGTGAAGCCCCATCTGCTGTTGCTGGACGAGCCGACGAATC
ACTTGGATTTGGACGCCTGTGTGTGGCTGGAGGAGGAGCTTAAGACATAC
AAGCGAATCCTGGTGCTCATCTCGCACTCGCAGGATTTCCTCAACGGTGT
CTGCACAAACATCATTCACCTGACG
MXO52641.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9281-PB | 1836 | CG9281-RB | 1..867 | 9..875 | 4335 | 100 | Plus |
| CG9281-PC | 1836 | CG9281-RC | 1..867 | 9..875 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9281-RD | 2565 | CG9281-RD | 243..1109 | 9..875 | 4335 | 100 | Plus |
| CG9281-RC | 3033 | CG9281-RC | 71..937 | 9..875 | 4335 | 100 | Plus |
| CG9281-RB | 3205 | CG9281-RB | 243..1109 | 9..875 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15708311..15708974 | 672..9 | 3320 | 100 | Minus |
| X | 23542271 | X | 15708033..15708241 | 875..667 | 1045 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:00:56 has no hits.
MXO52641.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:38 Download gff for
MXO52641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-PC | 1..867 | 9..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:43 Download gff for
MXO52641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 243..1109 | 9..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:21 Download gff for
MXO52641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9281-RB | 243..1109 | 9..875 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:21 Download gff for
MXO52641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15708033..15708238 | 670..875 | 100 | <- | Minus |
| X | 15708314..15708974 | 9..669 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:43 Download gff for
MXO52641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15602066..15602271 | 670..875 | 100 | <- | Minus |
| arm_X | 15602347..15603007 | 9..669 | 100 | | Minus |
