MXO52642.5prime Sequence
926 bp (880 high quality bases) assembled on 2007-04-02
> MXO52642.5prime
CAGTCGACATGATGAAAATGGAGACTGACAAAATAATGGACGAAACCAAC
TCCAATGCACAGGCCTTCACAACCACTATGCTGTACGACCCGGTGCGCAA
GAAAGACTCATCGCCCACCTACCAAACGGAGCGGGAACTCTGCTTTCAGT
ACTTCACCCAGTGGAGCGAGTCGGGCCAGGTGGACTTTGTGGAGCACCTG
CTGTCGCGCATGTGCCACTATCAACACGGACAGATCAATGCCTATCTCAA
GCCGATGCTCCAGCGGGACTTTATCACATTGCTGCCAATCAAGGGTCTGG
ATCACATCGCAGAAAACATTTTGTCGTACTTGGATGCCGAATCGCTCAAA
TCATCCGAGCTGGTCTGCAAGGAATGGCTGCGCGTCATTTCCGAGGGCAT
GCTCTGGAAGAAGCTCATCGAACGCAAGGTGCGCACAGATTCCTTGTGGC
GCGGACTGGCCGAGCGGCGTAATTGGATGCAGTACCTCTTCAAGCCAAGA
CCGGGCCAGACTCAACGGCCACACTCATTCCATCGCGAGTTGTTCCCCAA
GATAATGAATGACATTGACAGCATAGAGAACAACTGGCGGACTGGCCGCC
ACATGCTGCGCCGCATCAACTGCCGGTCCGAGAACTCGAAGGGTGTCTAT
TGTCTGCAGTACGATGACGGCAAGATTGTCTCCGGACTGAGGGACAACAC
CATCAAGATCTGGGATCGCACGGATTTGCAGTGCGTTAAGACCCTAATGG
GCCACACTGGATCGGTGCTGTGCCTGCAGTATGACGACAAGGTGATCATC
AGTGGCTCCAGCGACTCCACCGTCCGCGTGTGGGACGTCAATACCGGCGA
GATGGTCAACACCCTTATCCACCACTGCGAGGCGGTGCTGCACTTGCGCT
TTAACAATGGCATGATGGTTACCTGC
MXO52642.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3412-PA | 1533 | slmb-RA | 1..918 | 9..926 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slmb-RB | 3492 | CG3412-RB | 492..1409 | 9..926 | 4590 | 100 | Plus |
| slmb-RC | 2549 | CG3412-RC | 492..1409 | 9..926 | 4590 | 100 | Plus |
| slmb-RA | 3492 | CG3412-RA | 492..1409 | 9..926 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21122321..21122593 | 561..289 | 1365 | 100 | Minus |
| 3R | 32079331 | 3R | 21125162..21125384 | 288..66 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 21121822..21122009 | 926..739 | 940 | 100 | Minus |
| 3R | 32079331 | 3R | 21122072..21122251 | 740..561 | 900 | 100 | Minus |
| 3R | 32079331 | 3R | 21126938..21126994 | 65..9 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:06:15 has no hits.
MXO52642.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:39 Download gff for
MXO52642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3412-PA | 1..918 | 9..926 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:09 Download gff for
MXO52642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-RA | 485..1409 | 1..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:48 Download gff for
MXO52642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slmb-RA | 485..1409 | 1..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:48 Download gff for
MXO52642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21121822..21122007 | 741..926 | 100 | <- | Minus |
| 3R | 21122072..21122251 | 561..740 | 100 | <- | Minus |
| 3R | 21122322..21122593 | 289..560 | 100 | <- | Minus |
| 3R | 21125162..21125384 | 66..288 | 100 | <- | Minus |
| 3R | 21126938..21126998 | 1..65 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:09 Download gff for
MXO52642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16947544..16947729 | 741..926 | 100 | <- | Minus |
| arm_3R | 16947794..16947973 | 561..740 | 100 | <- | Minus |
| arm_3R | 16948044..16948315 | 289..560 | 100 | <- | Minus |
| arm_3R | 16950884..16951106 | 66..288 | 100 | <- | Minus |
| arm_3R | 16952660..16952720 | 1..65 | 93 | | Minus |
