MXO52644.5prime Sequence
871 bp (823 high quality bases) assembled on 2007-04-02
> MXO52644.5prime
CAGTCGACATGTCGCGCAAAATGGCCAAATTCTACAAGCTGGACATCAAT
CGCACCGAGTGGGAAATCCCGGAAACATACCAGAACCTGCAACCCGTGGG
TCAGGGTGCCTACGGCCAGGTCTGCAAGGCCGTGGTCCGCGGAACCAGCA
CGAAGGTGGCCATCAAGAAGCTTGCCAGGCCCTTCCAGTCGGCGGTCCAT
GCGAAGCGCACCTATCGGGAACTGCGGCTGCTGAAGCACATGGATCACGA
GAACGTTATTGGTCTGCTGGATGTCTTTCATCCAGGACAGCCCGCCGATT
CGCTGGATCAGTTCCAGCAAGTGTACATGGTGACCCACTTGATGGACGCC
GATCTGAACAACATAATACGCACGCATAATCTGTCTGATGATCATGTCCA
GTTTCTGGTCTACCAAATCCTGCGCGGTCTGAAGTACATCCACAGCGCTG
GGGTCATCCATCGTGATCTAAAGCCATCGAACATTGCGGTAAACGAGGAC
TGTGAGCTTCGCATCCTGGATTTCGGTTTGGCCCGTCCCGCAGAAAGCGA
GATGACCGGATACGTCGCAACGCGATGGTACCGGGCGCCTGAGATCATGC
TCAACTGGATGCACTACAACCAGACGGCGGACATCTGGTCGGTGGGCTGC
ATCATGGCTGAGCTGCTGACTGGGCGCACGCTGTTCCCTGGAACCGATCA
CATCCATCAGCTGAACCTCATCATGGAAGTGCTGGGCACGCCAGCTGATG
AGTTCATGAGCCGCATCTCCTCGGAGAGCGCTAGAAACTATATTCGTTCA
CTGCCGGTGATGCCGCGCCGCAATTTCTGCGACATCTTCCGCGGTGCCAA
TCCGCTGGCCATCGATTTGCT
MXO52644.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7393-PA | 1098 | p38b-RA | 1..863 | 9..871 | 4240 | 99.6 | Plus |
| CG5475-PA | 1101 | Mpk2-RA | 565..653 | 570..658 | 220 | 89.8 | Plus |
| CG5475-PB | 1101 | Mpk2-RB | 565..653 | 570..658 | 220 | 89.8 | Plus |
| CG5475-PA | 1101 | Mpk2-RA | 316..365 | 321..370 | 150 | 92 | Plus |
| CG5475-PB | 1101 | Mpk2-RB | 316..365 | 321..370 | 150 | 92 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p38b-RA | 1821 | CG7393-RA | 206..1072 | 5..871 | 4275 | 99.5 | Plus |
| p38a-RC | 1474 | CG5475-RC | 215..925 | 33..743 | 1240 | 78.6 | Plus |
| p38a-RB | 1634 | CG5475-RB | 375..1085 | 33..743 | 1240 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13780996..13781862 | 5..871 | 4275 | 99.5 | Plus |
| 3R | 32079331 | 3R | 24150965..24151675 | 743..33 | 1200 | 77.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:00:59 has no hits.
MXO52644.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:39 Download gff for
MXO52644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7393-PA | 1..863 | 9..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:45 Download gff for
MXO52644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p38b-RA | 203..1072 | 1..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:23 Download gff for
MXO52644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p38b-RA | 203..1072 | 1..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:23 Download gff for
MXO52644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13780993..13781862 | 1..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:45 Download gff for
MXO52644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13780993..13781862 | 1..871 | 99 | | Plus |
