MXO52645.5prime Sequence
876 bp (779 high quality bases) assembled on 2007-04-02
> MXO52645.5prime
CAGTCGACATGTCGTTCTTCGGATCCAACACGTCGCTGGGAGCAACAAGC
ACGCCGGCCAAAACAACCGGTGGCCTCTTCGGATCGCCGTTTGGAGGCAC
AGCTGCAACCAGCCAGCCAGCACCCGCTTTCGGAGCACAGGCCACATCGA
CTCCGGCTTTTGGCGCCCAACCGGCGACTTCTGCCTTCGGAGCAGGTTCC
GCCTTTGGAGCAACCGCTGCAGCCCCGGCTTTTGGAGCCGCCACAGGAAC
TTCTGCCTTTGGCGGCTCCGCCTTTGGCAGTACTCCGGCATTTGGTGCGG
CGACAACCACAACTGCGGGCACGGGTTTGGGAGGAGGCGGTTTCGGCGGA
TTTGGAGCAGCTCCGGCAACAAGTCAGGCCGGTCTGTTCGGCGCTCCAGC
GACTAGTGCAGCACCACCAGCTTTTAGCGGATTCGGCCAACAGGCAGCTG
CGAGTACAGCGCCAGCAAGTGGATTTTCAGGCTTTGGCACAACCACAACG
TCGGCACCTGCTTTTGGTGGCTTTGGCACCAGCCAGTCCACTGGCTTTGG
GGGCGGAGCCTTCGGATCCACGTTCGGAAAACCAGCGAATACAACAGTTA
CGCCGGGATTTGGTGGATTCGGAGGCACCAGTTTTATGCTTGGACAGCCG
CAACAGCAGCCAGCGCCCATATCGGCTGACGAGGCGTTTGCCCAATCCAT
TCTGAATGTATCCATTTTCGGGGATGAACGGGACAAAATAGTGGCCAAAT
GGAACTACTTGCAGGCTACGTGGGGCACTGGGAAAATGTTTTACTCCCAG
AGTGCGGCACCGGTAGACATTACGCCGGAGAACGTGATGTGCCGGTTCAA
GGCCATAGGCTACAGTCGTATGCCGG
MXO52645.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8831-PA | 1833 | CG8831-RA | 1..868 | 9..876 | 4340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup54-RA | 2048 | CG8831-RA | 163..1031 | 8..876 | 4345 | 100 | Plus |
| CG43204-RA | 641 | CG43204-RA | 227..282 | 63..8 | 280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12429954..12430460 | 570..64 | 2535 | 100 | Minus |
| 2R | 25286936 | 2R | 12429589..12429894 | 876..571 | 1530 | 100 | Minus |
| 2R | 25286936 | 2R | 12430882..12430937 | 63..8 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:31:35 has no hits.
MXO52645.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:40 Download gff for
MXO52645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8831-PA | 1..868 | 9..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:14 Download gff for
MXO52645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup54-RA | 157..1031 | 1..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:15 Download gff for
MXO52645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup54-RA | 157..1031 | 1..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:15 Download gff for
MXO52645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12429589..12429894 | 571..876 | 100 | <- | Minus |
| 2R | 12429954..12430460 | 64..570 | 100 | <- | Minus |
| 2R | 12430882..12430940 | 1..63 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:14 Download gff for
MXO52645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8317094..8317399 | 571..876 | 100 | <- | Minus |
| arm_2R | 8317459..8317965 | 64..570 | 100 | <- | Minus |
| arm_2R | 8318387..8318445 | 1..63 | 93 | | Minus |
