MXO52646.5prime Sequence
873 bp (783 high quality bases) assembled on 2007-04-02
> MXO52646.5prime
CCCCTAAAAGGAAGTTATCAGTCGACATGACAACGCCCACGCCCCCCACC
CTGGAAAAGGCTCTGAAAAGCGACCAGAAGCTTGTGAATTCCGCCACACA
GATAGCCAAGGATCTGACCGCCAAGGCATATGACATATCTGCTCTGGCCG
AGGCACTGGGCTTCGCCCTGTCCTCTCCGGACATGGAGGAGCGTGTGGCC
GGAACCAACTTGCTCTCCGCCGTGTTGATAGCACTGCCCCAGGATCTGCT
GCAAGAGCGGCAGCTGGAGTTCCTCAGCACCTTTTACATGGACCGCCTGC
GCGACCATCACAACGTAATGCCAGCCATTATCGATGGAATCGACGCCCTG
GTTCACATGAAAGCTCTACCGCGCGCCCAGATTCCCCAGATTCTGCATTC
ATTCTTCGAGCACACCACCTGCCAGTCGCAGACGCGGAGCGACCGCACCA
AGCTGTTCCACATTTTCCAGTACTTGACGGAAAACTTCCAGGACGAGCTG
CAAGCGATGGCCGGTGACTTCGTCTACGGCCTGATCAATTCCATTGACGG
CGAGCGTGACCCCCGCAACCTTGACATCATTTTCAGCTTCATGCCCGAGT
TCTTGTCAACGTATCCGCTGCTGCATTTGGCCGAAGAGATGTTTGAGATC
TTTGCGTGTTACTTTCCAATCGACTTTAATCCCAGCAAGCAGGATCCAGC
GGCCATAACCCGTGATGAATTGTCCAAGAAGTTGACTAACTGCCTGGTAG
CCAACAACGAATTCGCTGAGGGCACAGTGGTACTGGCCATAGAAAAGCTG
GAGAGTGAGTTGCTGGTTGCCAAACTGGACTCCATAGAACTGCTGCACCA
AGCTGCCGTGAAGTTCCCGCCTT
MXO52646.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12005-PB | 2880 | Mms19-RB | 1..847 | 27..873 | 4160 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mms19-RB | 3233 | CG12005-RB | 100..946 | 27..873 | 4190 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5232790..5233174 | 111..495 | 1910 | 99.7 | Plus |
| 3R | 32079331 | 3R | 5233384..5233734 | 495..845 | 1755 | 100 | Plus |
| 3R | 32079331 | 3R | 5232642..5232726 | 27..111 | 395 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:06:22 has no hits.
MXO52646.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:40 Download gff for
MXO52646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12005-PB | 1..847 | 27..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:13 Download gff for
MXO52646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mms19-RB | 100..946 | 27..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:52 Download gff for
MXO52646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mms19-RB | 100..946 | 27..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:52 Download gff for
MXO52646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5232642..5232726 | 27..111 | 97 | -> | Plus |
| 3R | 5232791..5233174 | 112..495 | 99 | -> | Plus |
| 3R | 5233385..5233734 | 496..845 | 100 | -> | Plus |
| 3R | 5233793..5233820 | 846..873 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:13 Download gff for
MXO52646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1058364..1058448 | 27..111 | 97 | -> | Plus |
| arm_3R | 1058513..1058896 | 112..495 | 99 | -> | Plus |
| arm_3R | 1059107..1059456 | 496..845 | 100 | -> | Plus |
| arm_3R | 1059515..1059542 | 846..873 | 100 | | Plus |
