MXO52652.5prime Sequence
773 bp (696 high quality bases) assembled on 2007-04-02
> MXO52652.5prime
CAGTCGACATGTCATGGGAGAGCACTAACTCCAAGGATCTCCTTAGCATC
CCACCAAGCCAGAATCTGTCTGCAACACGTTTACTTACATCACCTGATGG
ATCTCGTTACCTATTGGAAAATTCAAGCGACTTGTGTCACTTAGATGAGA
GTTTTTCGCGGTTGGCGGGATATGGATCTAGTCCAGATGTAGGATCCCGT
TCGGTATGGGCTAGCCAGGCGCTATTACGATCAGGTTCTGTTATCAGTTG
CTTTTTGTCCTGCCAGCAAAGCCTAAGACAGTACATAGCTAAACGGAAGA
TCGAGCGAGGACGACGGCTATATGAACAAAACAATCAAACGGAGGCCGTA
CGTACTTGGCGTAGTGCACTGAAAGGGACGTGCCAAAGAGAGGACTGCTT
TCAGCTACTAGGATATTTGTATCAGGCACATATGGACTGGGGAAAATTTC
GTGAGGCAATAGAATTCAGTCATCAGCAGCTCGGAATTTCAGAGGAGCTT
GATTCGCCAAATATGAGAGCCGAGACGTACTTAAATCTCAGCAGGGCACA
CGCCAGCTTGGGAGGCTTAGAGCGATCACTGAGTTATGCCAGGCACTCAC
TTTACAATGAGTGCGGCACTAAATGCAGAAGTGGACTTGTCCATTTGACG
GTTGCACGTGTATACCTAGAAATGGGTGGGTTCTCTAGGGCTTTGGAGGG
TTTGCAGGGTGCCTACAAAATTGCTACAGCTATTGGAGATCCATCACTGG
AGTTAACAGTGTATGTCGCGCTT
MXO52652.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1909-PA | 1821 | CG1909-RA | 1..765 | 9..773 | 3750 | 99.6 | Plus |
| CG1909-PB | 1821 | CG1909-RB | 1..765 | 9..773 | 3750 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1909-RB | 2374 | CG1909-RB | 155..920 | 8..773 | 3785 | 99.6 | Plus |
| CG1909-RA | 2401 | CG1909-RA | 182..947 | 8..773 | 3785 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 585297..585586 | 484..773 | 1420 | 99.3 | Plus |
| 4 | 1348131 | 4 | 584988..585174 | 298..484 | 935 | 100 | Plus |
| 4 | 1348131 | 4 | 584761..584931 | 129..299 | 855 | 100 | Plus |
| 4 | 1348131 | 4 | 583933..584018 | 44..129 | 430 | 100 | Plus |
| 4 | 1348131 | 4 | 583825..583863 | 8..46 | 180 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:28:34 has no hits.
MXO52652.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:42 Download gff for
MXO52652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1909-PB | 1..765 | 9..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:04 Download gff for
MXO52652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1909-RA | 174..947 | 1..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:35 Download gff for
MXO52652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1909-RA | 174..947 | 1..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:35 Download gff for
MXO52652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 583817..583863 | 1..46 | 91 | -> | Plus |
| 4 | 583936..584018 | 47..129 | 100 | -> | Plus |
| 4 | 584762..584931 | 130..299 | 100 | -> | Plus |
| 4 | 584990..585174 | 300..484 | 100 | -> | Plus |
| 4 | 585298..585586 | 485..773 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:04 Download gff for
MXO52652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 604443..604489 | 1..46 | 91 | -> | Plus |
| arm_4 | 604562..604644 | 47..129 | 100 | -> | Plus |
| arm_4 | 605388..605557 | 130..299 | 100 | -> | Plus |
| arm_4 | 605616..605800 | 300..484 | 100 | -> | Plus |
| arm_4 | 605924..606212 | 485..773 | 99 | | Plus |
