MXO52653.5prime Sequence
741 bp (728 high quality bases) assembled on 2007-04-02
> MXO52653.5prime
CAGTCGACATGTGGAAGGCAAGTGCCGGTCACCAGATTCAGGCCACCAGT
GCAGCCTCCGCGGAGGACGACGACTGGGAGACGGATCCGGACTTCGTGAA
CGATGTCAGTGAGCAGGAGCAGCGCTGGGGATCAAAGACGATCGACGGCA
GCGGTCGCACAGCAGGCACCATCGACATGGACAAGCTGCGCGAGGAGACG
GAGCAGGCCGATCTGGACAAGAAGAAGCAGCTGCTGAAGGATCAGAACGC
AGGATACGGATACGGGGGCAAGTTTGGCGTTGAGAAGGACCGCATGGACA
AGTCGGCTGTGGGTCATGACTACCAGGGCAAGGTGGGAAAGCACGCCTCG
CAGAAGGACTACAGCGATGGTTTTGGGGGAAAGTTCGGAGTGCAAGAGGA
TCGCAAGGACAAGTCTGCCGTGGGCTGGGACCACGTCGAAAAGGTCGAGA
AGCACGCCTCCCAGAAGGATTACGCCACCGGCTTCGGAGGCAAATTTGGA
GTGCAGTCCGATCGGGTGGATAAATCCGCCGTGGGCTGGGATCACATCGA
GAAGGTGGAGAAGCACGAGTCTCAGAAGGATTACTCCAAGGGCTTTGGCG
GCAAGTTTGGCGTTCAGGAGGACCGAAAGGACAAGTCCGCGGTGGGATGG
GACCACAAAGAGGCTCCGCAGAAGCACGCCAGCCAGGTGGACCACAAGGT
CAAGCCAGTCATCGAAGGTGCCAAGCCTTCCAATTTGCGTG
MXO52653.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3637-PA | 1680 | Cortactin-RA | 1..733 | 9..741 | 3665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cortactin-RD | 2388 | CG3637-RD | 163..895 | 9..741 | 3665 | 100 | Plus |
Cortactin-RC | 2391 | CG3637-RC | 166..898 | 9..741 | 3665 | 100 | Plus |
Cortactin-RB | 2419 | CG3637-RB | 194..926 | 9..741 | 3665 | 100 | Plus |
Cortactin-RD | 2388 | CG3637-RD | 418..700 | 375..657 | 305 | 74.3 | Plus |
Cortactin-RD | 2388 | CG3637-RD | 529..811 | 264..546 | 305 | 74.3 | Plus |
Cortactin-RC | 2391 | CG3637-RC | 421..703 | 375..657 | 305 | 74.3 | Plus |
Cortactin-RC | 2391 | CG3637-RC | 532..814 | 264..546 | 305 | 74.3 | Plus |
Cortactin-RD | 2388 | CG3637-RD | 484..588 | 552..656 | 195 | 79 | Plus |
Cortactin-RD | 2388 | CG3637-RD | 706..810 | 330..434 | 195 | 79 | Plus |
Cortactin-RC | 2391 | CG3637-RC | 487..591 | 552..656 | 195 | 79 | Plus |
Cortactin-RC | 2391 | CG3637-RC | 709..813 | 330..434 | 195 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21063426..21063829 | 579..176 | 2020 | 100 | Minus |
3R | 32079331 | 3R | 21063898..21064064 | 175..9 | 835 | 100 | Minus |
3R | 32079331 | 3R | 21063173..21063335 | 741..579 | 815 | 100 | Minus |
3R | 32079331 | 3R | 21063459..21063741 | 657..375 | 305 | 73.9 | Minus |
3R | 32079331 | 3R | 21063426..21063630 | 468..264 | 215 | 73.7 | Minus |
3R | 32079331 | 3R | 21063571..21063675 | 656..552 | 195 | 79 | Minus |
Blast to na_te.dros performed 2014-11-28 23:18:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 5609..5663 | 62..116 | 122 | 69.1 | Plus |
MXO52653.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:43 Download gff for
MXO52653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3637-PA | 1..733 | 9..741 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:34 Download gff for
MXO52653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cortactin-RB | 192..926 | 6..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:18 Download gff for
MXO52653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cortactin-RB | 192..926 | 6..741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:18 Download gff for
MXO52653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21063173..21063334 | 580..741 | 100 | <- | Minus |
3R | 21063426..21063829 | 176..579 | 100 | <- | Minus |
3R | 21063898..21064066 | 6..175 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:34 Download gff for
MXO52653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16888895..16889056 | 580..741 | 100 | <- | Minus |
arm_3R | 16889148..16889551 | 176..579 | 100 | <- | Minus |
arm_3R | 16889620..16889788 | 6..175 | 99 | | Minus |