MXO52656.5prime Sequence
877 bp (774 high quality bases) assembled on 2007-04-02
> MXO52656.5prime
CAGTCGACATGGAAATGCGTCTGACTGCGGCTTCCATATGGCTGTTAATA
CTGTCGTATGGAGCAACTATTGCTCAAGGAGAAAGAACCCGCGATAAGAT
GTACGAGCCCATTGGAGGAGCTAGCTGTTTCCGACGGCTGAATGGCACCC
ATCAGACAGGCTGTTCCTCAACCTACTCCGGTTCCGTGGGCGTACTACAT
CTAATAAACGTCGAGGCCGACCTGGAATTTCTTCTTAGCAGCCCACCATC
TCCACCTTACGCCCCCATGATACCACCTCACCTGTTCACACGTAACAACC
TGATGCGCCTAAAGGAAGCCGGACCAAAGAACATTTCTGTGGTGCTGCTG
ATCAACCGCACGAACCAGATGAATCATTTCTCGCACGAACTCAACTGCCC
CAATCAGTACAGCGGCCTGAACAGCACCAGTGAGACCTGCGACGCCAGCA
ATCCAGCCAAAAACTGGAATCCCTGGGGCACTGGACTTCTGCACGAGGAC
TTTCCCTTTCCTATCTATTACATAGCCGATTTGGATCAGGTCACCAAGCT
AGAGAAGTGCTTTCAGGACTTTAACAACCATAACTACGAGACGCACGCGC
TGCGTAGCTTGTGCGCCGTCGAGGTCAAGTCCTTTATGTCCGCCGCTGTC
AACACCGAGGTCTGTATGCGCCGCACCAACTTCATCAATAATCTTGGAGG
AAGCAAGTACTGCGATCCGCTCGAGGGACGGAATGTTTACGCCACCTTGT
ACCCCCGAAAGCCAGCAATCGAAAACTACTTGGAGACAGTCCATACGACT
GAATAGTTCATATTAGTAACCTGTCGCCTGCACACCACCACCATGTTCGA
TGGCGTCGGTCTTGGAGCCCTGGACTC
MXO52656.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7012-PA | 2088 | nct-RA | 1..869 | 9..877 | 4145 | 99 | Plus |
| CG7012-PB | 1998 | nct-RB | 1..779 | 99..877 | 3720 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nct-RE | 2631 | CG7012-RE | 49..917 | 9..877 | 4225 | 99.1 | Plus |
| nct-RD | 2606 | CG7012-RD | 49..917 | 9..877 | 4225 | 99.1 | Plus |
| nct-RC | 2768 | CG7012-RC | 49..917 | 9..877 | 4225 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24851986..24852677 | 169..860 | 3370 | 99.1 | Plus |
| 3R | 32079331 | 3R | 24851837..24851933 | 72..168 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 24851649..24851712 | 9..72 | 305 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:10:35 has no hits.
MXO52656.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:43 Download gff for
MXO52656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7012-PA | 1..869 | 9..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:51 Download gff for
MXO52656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nct-RC | 44..917 | 1..877 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:51 Download gff for
MXO52656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nct-RC | 44..917 | 1..877 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:51 Download gff for
MXO52656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24851644..24851712 | 1..72 | 93 | -> | Plus |
| 3R | 24851838..24851933 | 73..168 | 100 | -> | Plus |
| 3R | 24851986..24852680 | 169..867 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:51 Download gff for
MXO52656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20677366..20677434 | 1..72 | 93 | -> | Plus |
| arm_3R | 20677560..20677655 | 73..168 | 100 | -> | Plus |
| arm_3R | 20677708..20678402 | 169..867 | 98 | | Plus |
