MXO52657.5prime Sequence
771 bp (674 high quality bases) assembled on 2007-04-02
> MXO52657.5prime
CAGTCGACATGTCGAAGAACAAGCTGAATCTGGTGCTGCCGCCGGTAAAT
ACGGAGGCAACTGTTGCCGCCGCCACAGTGGCGCCGACGCCGCCATTCAA
AACCCCCTCGGGCACAGACACACACAGTTTGCTGGGGAAGCCCAAGACGA
GCATCGATGCGCTGACAGAGACGCTGGAGGGTCTGGACATGGGCGACACG
GAACGCAAGCGGATCAAGATGTTCCTCAGCCAGAAGGAGAAGATCGGCGA
GCTGTCCGACGAGGATCTGGAGAAGCTGGGCGAGCTCGGATCGGGCAATG
GCGGCGTGGTGATGAAGGTCCGGCACACGCACACACACCTGATCATGGCC
AGGAAACTGATCCATCTGGAGGTGAAGCCGGCGATCAAGAAACAGATCCT
GCGCGAACTGAAAGTCCTGCACGAATGTAATTTCCCGCACATTGTCGGTT
TCTACGGCGCCTTCTACAGCGACGGCGAGATCAGTATCTGCATGGAGTAT
ATGGACGGTGGATCACTTGACCTGATCCTCAAGCGGGCCGGTCGAATACC
AGAGTCCATTCTCGGCAGGATCACGCTGGCGGTGCTCAAGGGCTTGAGCT
ATCTGCGCGACAATCACGCCATCATCCACCGTGACGTGAAGCCGAGCAAT
ATCCTCGTCAATAGCAGCGGCGAGATCAAGATCTGTGATTTCGGCGTCTC
CGGTCAACTGATCGACTCGATGGCCAACTCCTTTGTGGGCACCCGTAGCT
ATATGTCGCCGGAGCGATTGC
MXO52657.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15793-PA | 1191 | Dsor1-RA | 1..763 | 9..771 | 3815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsor1-RA | 1799 | CG15793-RA | 458..1220 | 9..771 | 3815 | 100 | Plus |
| Dsor1-RB | 1503 | CG15793-RB | 171..924 | 9..771 | 3670 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9248542..9249181 | 119..758 | 3200 | 100 | Plus |
| X | 23542271 | X | 9247799..9247908 | 9..118 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:02:54 has no hits.
MXO52657.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:44 Download gff for
MXO52657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15793-PA | 1..763 | 9..771 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:03 Download gff for
MXO52657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsor1-RA | 451..1220 | 1..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:32 Download gff for
MXO52657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsor1-RA | 451..1220 | 1..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:32 Download gff for
MXO52657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9247792..9247908 | 1..118 | 96 | -> | Plus |
| X | 9248542..9249181 | 119..758 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:03 Download gff for
MXO52657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9141825..9141941 | 1..118 | 96 | -> | Plus |
| arm_X | 9142575..9143214 | 119..758 | 100 | -> | Plus |
