MXO52658.5prime Sequence
877 bp (814 high quality bases) assembled on 2007-04-02
> MXO52658.5prime
CAGTCGACATGACAACCGACGAGAGCATAATGGAGGAGATGCTGGAGAGA
GCAACAAATCCGGCACAGAAAATCGACGAACTGGGCGTGCAAATGTTCTG
CATTGTGGTCAAAAGCAACGCCCAATTGGTGCACAAGGCGCAGGAGATGA
TTGTGGCCAAGGTGCGATCCACAAATGTGACGGAGGCGACGCGAGCGATT
TCGCTGCTGGAGGAGTGCATGACGCAGTGCGGCGACGACTTCCAGGACGA
GGCGTCCAAATTCCGCTTTCTCAACGAACTGATACGCCTGGTATCGAAGA
AGTACAAGGGCGCCGAGACGCCGCACGAAGTGAAGCAGCGGATCATGGAG
TGCCTACTGCTGTGGACCACCGAGTTCCCGCAGCGTCAGAAGATACGCGA
TGCCTACGACATGTTGCGCAAGGAGGGGGACATCGAACACGGCACCACGG
AGGCGGCGGTGGCCAAAAGGGAGAGTGTACTGGGCACTATTGACGAGGCC
ATGTTCGCCAAGCTGATCAAGAGCAATAATCCCGAGAACTTCAAGCGGGC
CAATCTACTGCTNGCAGTATCNGGATGGCACAGGAGGCGCGTCGCAACGA
TCTGCTGGCCCAGCATCGTCTAGTCCTTTGCGAGGTGCAGGAGACGATGC
AGCTGCTCAACCAAATGCTGGACACCTACGATCCCGCCAACCAGGACGTC
AGCGAAACACTGCACGAGCTATACAAGAGCTGCAAGAAGCACAAGCCCAT
CTTTCAGCATCTGCCGCAGCTGCTGGACGATTCCGATGCGCAGCTTGTAG
CTGACACTCTGGATGCCAATTGCGCTCTACTGGCCACCATGCAGCGCTAC
AAGCTTCTGGTGCCATCGCCCACAGGA
MXO52658.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3002-PB | 1983 | Gga-RB | 1..554 | 9..562 | 2770 | 100 | Plus |
| CG3002-PB | 1983 | Gga-RB | 563..864 | 573..874 | 1510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gga-RB | 2360 | CG3002-RB | 111..974 | 9..874 | 4280 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9602080..9602675 | 203..800 | 2890 | 99.7 | Plus |
| X | 23542271 | X | 9601253..9601411 | 45..203 | 795 | 100 | Plus |
| X | 23542271 | X | 9602743..9602818 | 799..874 | 380 | 100 | Plus |
| X | 23542271 | X | 9601140..9601176 | 9..45 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:07:39 has no hits.
MXO52658.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:24:44 Download gff for
MXO52658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3002-PB | 1..866 | 9..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:05 Download gff for
MXO52658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gga-RB | 104..976 | 1..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:48 Download gff for
MXO52658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gga-RB | 104..976 | 1..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:48 Download gff for
MXO52658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9601133..9601176 | 1..45 | 91 | -> | Plus |
| X | 9601254..9601411 | 46..203 | 100 | -> | Plus |
| X | 9602081..9602675 | 204..800 | 99 | -> | Plus |
| X | 9602745..9602820 | 801..876 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:05 Download gff for
MXO52658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9495166..9495209 | 1..45 | 91 | -> | Plus |
| arm_X | 9495287..9495444 | 46..203 | 100 | -> | Plus |
| arm_X | 9496114..9496708 | 204..800 | 99 | -> | Plus |
| arm_X | 9496778..9496853 | 801..876 | 98 | | Plus |
